RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SPAG16Q8N0X2 631 aa7.72□□□□□ -1.17
CUX1-216ENST00000558469 OR5AN1Q8NGI8 311 aa7.72□□□□□ -1.17
CUX1-216ENST00000558469 TP53RKQ96S44 253 aa7.72□□□□□ -1.17
CUX1-216ENST00000558469 NAA60Q9H7X0 242 aa7.72□□□□□ -1.17
CUX1-216ENST00000558469 LIN7CQ9NUP9 197 aaKnown RBP7.72□□□□□ -1.17
CUX1-216ENST00000558469 KCNIP3Q9Y2W7 256 aa7.72□□□□□ -1.17
CUX1-216ENST00000558469 WASHC3Q9Y3C0 194 aa7.72□□□□□ -1.17
CUX1-216ENST00000558469 MTORP42345 2549 aa7.72□□□□□ -1.17
CUX1-216ENST00000558469 FAM90A9PA6NNJ1 464 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 INMT-MINDY4F8WBC2 141 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 H0Y980 276 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 PEX14O75381 377 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 CRLF1O75462 422 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 CRYZL1O95825 349 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 MOSP00540 346 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 IFNA2P01563 188 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 IGHV4-59P01825 116 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 IGKV1-16P04430 117 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 OR5AC1P0C628 307 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 OR4E1P0C645 316 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 FAM106CPP0CH98 169 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 VSIG10L2P0DP72 767 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 RRASP10301 218 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 VAMP1P23763 118 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 KIR2DS2P43631 304 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 LPAR6P43657 344 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 IER3P46695 156 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 UBE2MP61081 183 aaKnown RBP7.71□□□□□ -1.18
CUX1-216ENST00000558469 RPS16P62249 146 aaKnown RBP7.71□□□□□ -1.18
CUX1-216ENST00000558469 SUPT4H1P63272 117 aaKnown RBP7.71□□□□□ -1.18
CUX1-216ENST00000558469 DHODHQ02127 395 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 PPP1R1AQ13522 171 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 HNF4GQ14541 408 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 SLC9A3R2Q15599 337 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 C4orf46Q504U0 113 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 FBLN7Q53RD9 439 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 C11orf88Q6PI97 169 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 RBMS3Q6XE24 437 aaKnown RBP7.71□□□□□ -1.18
CUX1-216ENST00000558469 TCTEX1D1Q8N7M0 179 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 OR2T10Q8NGZ9 312 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 PIFOQ8TCI5 191 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 CD300LFQ8TDQ1 290 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 FLYWCH2Q96CP2 140 aaKnown RBP7.71□□□□□ -1.18
CUX1-216ENST00000558469 RITA1Q96K30 269 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 MARVELD1Q9BSK0 173 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 ALX4Q9H161 411 aaPredicted RBP7.71□□□□□ -1.18
CUX1-216ENST00000558469 PRDM13Q9H4Q3 707 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 TNFRSF19Q9NS68 423 aa7.71□□□□□ -1.18
CUX1-216ENST00000558469 SHOXO15266 292 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 HOXA3O43365 443 aaPredicted RBP7.7□□□□□ -1.18
CUX1-216ENST00000558469 B3GALNT1O75752 331 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 DHFRP00374 187 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 HLA-AP01891 365 aaKnown RBP7.7□□□□□ -1.18
CUX1-216ENST00000558469 SERPINE2P07093 398 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 FAM157CP0CG43 387 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 ANXA3P12429 323 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 TMEM11P17152 192 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 MECP2P51608 486 aaKnown RBP7.7□□□□□ -1.18
CUX1-216ENST00000558469 RELBQ01201 579 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 OXA1LQ15070 435 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 LY6EQ16553 131 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 AANATQ16613 207 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 ZNF585BQ52M93 769 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 THNSL2Q86YJ6 484 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 PDPNQ86YL7 162 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 OR52B4Q8NGK2 314 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 OR4C13Q8NGP0 309 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 OR4S2Q8NH73 311 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 CASTOR1Q8WTX7 329 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 GLYATL2Q8WU03 294 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 SSMEM1Q8WWF3 244 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 GALNT14Q96FL9 552 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 EAF1Q96JC9 268 aaPredicted RBP7.7□□□□□ -1.18
CUX1-216ENST00000558469 SEC22CQ9BRL7 303 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 TMEM222Q9H0R3 208 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 PRR13Q9NZ81 148 aa7.7□□□□□ -1.18
CUX1-216ENST00000558469 TEP1Q99973 2627 aaKnown RBP7.7□□□□□ -1.18
CUX1-216ENST00000558469 FN1P02751 2386 aaKnown RBP7.7□□□□□ -1.18
CUX1-216ENST00000558469 ANK3Q12955 4377 aaKnown RBP7.7□□□□□ -1.18
CUX1-216ENST00000558469 TET2Q6N021 2002 aaPredicted RBP7.69□□□□□ -1.18
CUX1-216ENST00000558469 CUBNO60494 3623 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 C9orf170A2RU37 121 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 BTBD17A6NE02 478 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 RBFOX2O43251 390 aaKnown RBP eCLIP7.69□□□□□ -1.186e-7■■■□□ 18.3
CUX1-216ENST00000558469 WIPF1O43516 503 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 S1PR2O95136 353 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 SFT2D2O95562 160 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 HPRT1P00492 218 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 CNTFRP26992 372 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 F2RL1P55085 397 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 RAG2P55895 527 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 DHRS2Q13268 280 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 EBI3Q14213 229 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 TMEM187Q14656 261 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 TMEM177Q53S58 311 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 DHRS7BQ6IAN0 325 aaPredicted RBP7.69□□□□□ -1.18
CUX1-216ENST00000558469 LYG2Q86SG7 212 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 TMEM219Q86XT9 240 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 MINDY2Q8NBR6 621 aa7.69□□□□□ -1.18
CUX1-216ENST00000558469 OR5R1Q8NH85 324 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms