RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 SYS1Q8N2H4 156 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 NATD1Q8N6N6 113 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 C9orf163Q8N9P6 203 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 SGMS2Q8NHU3 365 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 TNFAIP8L1Q8WVP5 186 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 ASB13Q8WXK3 278 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 ERMAPQ96PL5 475 aaPredicted RBP-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 AMELYQ99218 206 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 C10orf95Q9H7T3 257 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 STMN3Q9NZ72 180 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 COMMD9Q9P000 198 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 KLK9Q9UKQ9 250 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 RBM7Q9Y580 266 aaKnown RBP-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 NSD2O96028 1365 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 FLT4P35916 1363 aa-0.1□□□□□ -2.43
VPS13C-205ENST00000558088 A0A1W2PPM0 123 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 IBA57-AS1B1ANH7 110 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 OR2T1O43869 369 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 IGLV3-27P01718 113 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 BGNP21810 368 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 AGTR1P30556 359 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 AKR1C1Q04828 323 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 FLOT2Q14254 428 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 MESTQ5EB52 335 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 C1orf174Q8IYL3 243 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 C1orf158Q8N1D5 194 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 RPP25LQ8N5L8 163 aaKnown RBP-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 ZNF321PQ8N8H1 164 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 LGALS14Q8TCE9 139 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 PPWD1Q96BP3 646 aaKnown RBP-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 LINC00526Q96FQ7 95 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 HBEGFQ99075 208 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 TMEM208Q9BTX3 173 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 CHST6Q9GZX3 395 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 ACER3Q9NUN7 267 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 RMND1Q9NWS8 449 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 MAT2BQ9NZL9 334 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 SNX24Q9Y343 169 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 SBDSQ9Y3A5 250 aaKnown RBP eCLIP-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 GMEB1Q9Y692 573 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 NAV3Q8IVL0 2385 aa-0.11□□□□□ -2.43
VPS13C-205ENST00000558088 ALPK2Q86TB3 2170 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 MYO5BQ9ULV0 1848 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 TNRC6BQ9UPQ9 1833 aaKnown RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 DSCAMO60469 2012 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 A0A1B0GW15 77 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 RAB19A4D1S5 217 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 GOLGA8RI6L899 631 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 K7ERQ8 282 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 KDELR3O43731 214 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 HLA-DQB2P05538 268 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 KDELR1P24390 212 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 HAAOP46952 286 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 EIF2B2P49770 351 aaKnown RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 TMEM33P57088 247 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 TBPL1P62380 186 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 RPL30P62888 115 aaKnown RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 UBE2IP63279 158 aaKnown RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 RASSF6Q6ZTQ3 369 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 OOSP2Q86WS3 158 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 Q8N814 137 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 WFDC11Q8NEX6 87 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 OR4C6Q8NH72 309 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 CCDC12Q8WUD4 166 aaPredicted RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 MITD1Q8WV92 249 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 TAMM41Q96BW9 452 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 MED10Q9BTT4 135 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 YIPF3Q9GZM5 350 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 CISHQ9NSE2 258 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 ZNHIT6Q9NWK9 470 aaKnown RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 CFAP45Q9UL16 551 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 CACNA1EQ15878 2313 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 BRWD1Q9NSI6 2320 aa-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 DMBT1Q9UGM3 2413 aaPredicted RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 EIF4G1Q04637 1599 aaKnown RBP-0.12□□□□□ -2.43
VPS13C-205ENST00000558088 TTC41PQ6P2S7 1318 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 FSIP2Q5CZC0 6907 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 MED12LQ86YW9 2145 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 TRAV8-1A0A0A6YYK1 113 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 GOLGA6L7A0A1B0GV03 622 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 OR51F1A6NGY5 319 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 PTMSP20962 102 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 PTNP21246 168 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 CCNOP22674 350 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 BRS3P32247 399 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 CRATP43155 626 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 C1QTNF8P60827 252 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 DAD1P61803 113 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 RAB31Q13636 194 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 KCNJ8Q15842 424 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 NDUFA5Q16718 116 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 FAM27BQ5VT28 67 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 LRRC6Q86X45 466 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 ACBD4Q8NC06 268 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 RAB2BQ8WUD1 216 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 BORCS5Q969J3 196 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 OR51B6Q9H340 312 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 TIMM22Q9Y584 194 aa-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 DNMT1P26358 1616 aaKnown RBP-0.13□□□□□ -2.43
VPS13C-205ENST00000558088 MED12Q93074 2177 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms