RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	PDLIM3	Q53GG5	364 aa	Predicted RBP	13.6	□□□□□ -0.23
SHMT2-231	ENST00000557433	CST9LP1	Q5W188	147 aa		13.6	□□□□□ -0.23
SHMT2-231	ENST00000557433	TUBG2	Q9NRH3	451 aa		13.6	□□□□□ -0.23
SHMT2-231	ENST00000557433	LY96	Q9Y6Y9	160 aa		13.6	□□□□□ -0.23
SHMT2-231	ENST00000557433	MARCH11	A6NNE9	402 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	NDUFB4	O95168	129 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	SCGB1D1	O95968	90 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	SNRPC	P09234	159 aa	Known RBP	13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	ESD	P10768	282 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	CD82	P27701	267 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	HTD2	P86397	168 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	TGFBR3	Q03167	851 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	UBALD2	Q8IYN6	164 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	HLA-C	Q95604	372 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	SPRY4	Q9C004	299 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	OR2J1	Q9GZK6	312 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	KIAA2026	Q5HYC2	2103 aa		13.59	□□□□□ -0.23
SHMT2-231	ENST00000557433	C21orf140	B9A014	251 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	C3orf80	F5H4A9	247 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	KLRC4-KLRK1	H3BQV0	150 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	OR4A8	P0C604	315 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	STAG3L2	P0CL84	134 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	STAG3L3	P0CL85	134 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	KITLG	P21583	273 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	SGMS2	Q8NHU3	365 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	R3HDM4	Q96D70	268 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	MS4A10	Q96PG2	267 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	ZNF407	Q9C0G0	2248 aa		13.58	□□□□□ -0.23
SHMT2-231	ENST00000557433	TNRC18	O15417	2968 aa	Predicted RBP	13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	RBFOX2	O43251	390 aa	Known RBP eCLIP	13.58	□□□□□ -0.24	5e-15	■■■■■ 33.3
SHMT2-231	ENST00000557433	HPRT1	P00492	218 aa		13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	SPINK2	P20155	84 aa		13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	ATP5G3	P48201	142 aa		13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	TRIP6	Q15654	476 aa	Known RBP	13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	OR10G8	Q8NGN5	311 aa		13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	CXXC4	Q9H2H0	198 aa		13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	FREM1	Q5H8C1	2179 aa		13.58	□□□□□ -0.24
SHMT2-231	ENST00000557433	SPINT2	O43291	252 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	MT-CO2	P00403	227 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	GRP	P07492	148 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	TDGF1	P13385	188 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	TPPP2	P59282	170 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	TLE1	Q04724	770 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	SLC25A40	Q8TBP6	338 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	ZCCHC14	Q8WYQ9	949 aa	Known RBP	13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	COQ2	Q96H96	371 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	HES7	Q9BYE0	225 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	C12orf49	Q9H741	205 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	PCSK5	Q92824	1860 aa		13.57	□□□□□ -0.24
SHMT2-231	ENST00000557433	GALR2	O43603	387 aa	Predicted RBP	13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	RAB4A	P20338	218 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	GABRA2	P47869	451 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	RAN	P62826	216 aa	Known RBP	13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	RPL19	P84098	196 aa	Known RBP	13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	ZXDA	P98168	799 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	TEX38	Q6PEX7	206 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	INO80C	Q6PI98	192 aa	Predicted RBP	13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	ACP7	Q6ZNF0	438 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	OR5T1	Q8NG75	326 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	CMTM2	Q8TAZ6	248 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	QTRT1	Q9BXR0	403 aa	Known RBP	13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	POLR3K	Q9Y2Y1	108 aa	Predicted RBP	13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	ARL2-SNX15	V9GYD0	113 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	TRBV9	A0A0B4J1U6	114 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433		C9JCJ5	164 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	EREG	O14944	169 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	CRYAA	P02489	173 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	SP1	P08047	785 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	C1QTNF9	P0C862	333 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	TIMP3	P35625	211 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	KIR2DS2	P43631	304 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	MEOX1	P50221	254 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	AES	Q08117	197 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	PSG7	Q13046	419 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	MRGPRD	Q8TDS7	321 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	SNHG12	Q9BXW3	62 aa		13.56	□□□□□ -0.24
SHMT2-231	ENST00000557433	TRAV38-1	A0A0B4J264	116 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	LINC00473	A8K010	186 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433		A8MXE2	369 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	EDDM3B	P56851	147 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	UBE2G2	P60604	165 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	ESPL1	Q14674	2120 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	SMIM21	Q3B7S5	101 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	DCAF10	Q5QP82	559 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	OR4A16	Q8NH70	328 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	C11orf52	Q96A22	123 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	C20orf144	Q9BQM9	153 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	ZDHHC11	Q9H8X9	412 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	OBP2B	Q9NPH6	170 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	TMEM106B	Q9NUM4	274 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	IL36B	Q9NZH7	164 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	USP34	Q70CQ2	3546 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	ARHGAP21	Q5T5U3	1957 aa		13.55	□□□□□ -0.24
SHMT2-231	ENST00000557433	PATE3	B3GLJ2	98 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	ARL14EPL	P0DKL9	152 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	ERVK-16	P61578	105 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	TREML4	Q6UXN2	200 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	C11orf53	Q8IXP5	236 aa		13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	MAFA	Q8NHW3	353 aa	Predicted RBP	13.54	□□□□□ -0.24
SHMT2-231	ENST00000557433	TRGV8	A0A0C4DH27	118 aa		13.54	□□□□□ -0.24

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