RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 GAGE10A6NGK3 116 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 FOXI3A8MTJ6 420 aaPredicted RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 FOXH1O75593 365 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 SFTA3P0C7M3 94 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF20P17024 532 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 GATA3P23771 443 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 PPP1R1AQ13522 171 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 AWAT1Q58HT5 328 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 GLIPR1L1Q6UWM5 242 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 Q6ZVH6 145 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF709Q8N972 641 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 C5orf17Q8NAS9 161 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 MOB3AQ96BX8 217 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 SGK494Q96LW2 274 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 SLC25A31Q9H0C2 315 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 YLPM1P49750 1951 aaKnown RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ESPL1Q14674 2120 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 A0A1W2PR80 420 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 M0R135 149 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 SOCS1O15524 211 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 DHRS3O75911 302 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 MT-CO3P00414 261 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 PATE4P0C8F1 98 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 PGAM2P15259 253 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 LHX2P50458 406 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 OC90Q02509 493 aaPredicted RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 OR8B8Q15620 311 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 C4orf48Q5BLP8 95 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 FAM110DQ8TAY7 271 aaPredicted RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF799Q96GE5 643 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 TUBA4BQ9H853 241 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 TMEM89A2RUT3 159 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF736B4DX44 427 aaPredicted RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 J3QLI3 93 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 OR7C1O76099 320 aaPredicted RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 CYB5AP00167 134 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 AMY2AP04746 511 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H1EP10412 219 aaKnown RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ADCYAP1P18509 176 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 NME2P22392 152 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 SLC6A9P48067 706 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 KISS1Q15726 138 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 IAH1Q2TAA2 248 aaPredicted RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 LY6G6FQ5SQ64 297 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 HES3Q5TGS1 186 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF660Q6AZW8 331 aaPredicted RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 TRAPPC6BQ86SZ2 158 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 OR5A2Q8NGI9 324 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ZDHHC16Q969W1 377 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 FLYWCH2Q96CP2 140 aaKnown RBP4.33□□□□□ -1.72
TMEM260-210ENST00000556422 BANF2Q9H503 90 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 TAF9BQ9HBM6 251 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 RETNQ9HD89 108 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 ANAPC10Q9UM13 185 aa4.33□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BKO60814 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HPNP05981 417 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BJP06899 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 FCGR2AP12318 317 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF32P17041 273 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BOP23527 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BBP33778 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 SULT1A1P50225 295 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF83P51522 516 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BDP58876 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BCP62807 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST2H2BEQ16778 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.32□□□□□ -1.72
TMEM260-210ENST00000556422 TCF24Q7RTU0 167 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 OR2W3Q7Z3T1 314 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 SLC30A7Q8NEW0 376 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 OR1B1Q8NGR6 318 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BHQ93079 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BNQ99877 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 HIST1H2BMQ99879 126 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 NDFIP1Q9BT67 221 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 MAP1LC3AQ9H492 121 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 SLC7A10Q9NS82 523 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 VSIG4Q9Y279 399 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 FAM96BQ9Y3D0 163 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 SPTBN2O15020 2390 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 SHANK1Q9Y566 2161 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 ODAMA1E959 279 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 GAGE12HA6NDE8 117 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 MFNGO00587 321 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 MSTNO14793 375 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 GEMIN2O14893 280 aaKnown RBP4.32□□□□□ -1.72
TMEM260-210ENST00000556422 TAS2R31P59538 309 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 PSG4Q00888 419 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 EIF3IQ13347 325 aaKnown RBP4.32□□□□□ -1.72
TMEM260-210ENST00000556422 RAB35Q15286 201 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 NKPD1Q17RQ9 610 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 CEACAM16Q2WEN9 425 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 AMMECR1LQ6DCA0 310 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF584Q8IVC4 421 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 ZNF101Q8IZC7 436 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 PNPLA2Q96AD5 504 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 TIMD4Q96H15 378 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 IP6K3Q96PC2 410 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 FOXB1Q99853 325 aa4.32□□□□□ -1.72
TMEM260-210ENST00000556422 TTTY12Q9BZ98 90 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms