RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 NDUFB2O95178 105 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 TNNC2P02585 160 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 OR5G3P0C626 314 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 OMPP47874 163 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 SULT1A1P50225 295 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 TBPL1P62380 186 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 LGALS9BQ3B8N2 356 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 LGALS9CQ6DKI2 356 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 UMODL1-AS1Q8N2C9 162 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 OR11H2Q8NH07 326 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 RNASE6Q93091 150 aaKnown RBP2.5□□□□□ -2.01
SCFD1-209ENST00000553280 GNPNAT1Q96EK6 184 aaPredicted RBP2.5□□□□□ -2.01
SCFD1-209ENST00000553280 LRRC19Q9H756 370 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 COQ4Q9Y3A0 265 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 PXMP4Q9Y6I8 212 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 TRPM3Q9HCF6 1732 aaPredicted RBP2.5□□□□□ -2.01
SCFD1-209ENST00000553280 KMT2EQ8IZD2 1858 aa2.5□□□□□ -2.01
SCFD1-209ENST00000553280 IGKV3D-11A0A0A0MRZ8 115 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 IGHV1-69-2A0A0G2JMI3 117 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 A0A1W2PQL4 384 aaPredicted RBP2.49□□□□□ -2.01
SCFD1-209ENST00000553280 TMEM210A6NLX4 147 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 OR4C45A6NMZ5 311 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 TMEM114B3SHH9 223 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 E7EQL1 145 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 COX7A2LO14548 114 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 CTSGP08311 255 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 ZNF140P52738 457 aaPredicted RBP2.49□□□□□ -2.01
SCFD1-209ENST00000553280 RWDD2BP57060 319 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 SPCS3P61009 180 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 LSM6P62312 80 aaKnown RBP2.49□□□□□ -2.01
SCFD1-209ENST00000553280 FKBP1AP62942 108 aaKnown RBP2.49□□□□□ -2.01
SCFD1-209ENST00000553280 CTAG1AP78358 180 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 PSG4Q00888 419 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 IFITM2Q01629 132 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 FAM201AQ5SY85 155 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 HCP5Q6MZN7 132 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 TMEM86BQ8N661 226 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 DAND5Q8N907 189 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 SLC35B4Q969S0 331 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 C12orf43Q96C57 262 aaKnown RBP2.49□□□□□ -2.01
SCFD1-209ENST00000553280 CHMP6Q96FZ7 201 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 SLC22A13Q9Y226 551 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 SHROOM3Q8TF72 1996 aa2.49□□□□□ -2.01
SCFD1-209ENST00000553280 SHANK3Q9BYB0 1731 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 TGIF2-C20orf24A0A0A6YYL0 155 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 C9JCJ5 164 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 KPNA3O00505 521 aaPredicted RBP2.48□□□□□ -2.01
SCFD1-209ENST00000553280 UBE2L6O14933 153 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 TCRBP04435 133 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 CTXN2P0C2S0 81 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 CPMP14384 443 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 HOXA6P31267 233 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 SERPINB10P48595 397 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 TNFAIP6P98066 277 aaPredicted RBP2.48□□□□□ -2.01
SCFD1-209ENST00000553280 SPOPLQ6IQ16 392 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 ZNF322Q6U7Q0 402 aaPredicted RBP2.48□□□□□ -2.01
SCFD1-209ENST00000553280 ALKAL1Q6UXT8 129 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 GPHB5Q86YW7 130 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 OR51D1Q8NGF3 324 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 OR5C1Q8NGR4 320 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 LHFPL5Q8TAF8 219 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 RPS4Y2Q8TD47 263 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 RAB2BQ8WUD1 216 aa2.48□□□□□ -2.01
SCFD1-209ENST00000553280 DSCAML1Q8TD84 2053 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 A0A1B0GV50 99 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 OR5K4A6NMS3 321 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 IGKV4-1P06312 121 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 LGALS3P17931 250 aaKnown RBP2.47□□□□□ -2.01
SCFD1-209ENST00000553280 ALOX5APP20292 161 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 CD200P41217 278 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 IDH3GP51553 393 aaPredicted RBP2.47□□□□□ -2.01
SCFD1-209ENST00000553280 RANP62826 216 aaKnown RBP2.47□□□□□ -2.01
SCFD1-209ENST00000553280 TNFRSF9Q07011 255 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 AESQ08117 197 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 STX5Q13190 355 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 C2orf91Q6ZV80 131 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 SPATA12Q7Z6I5 190 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 SLC22A24Q8N4F4 322 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 CNEP1R1Q8N9A8 125 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 AICDAQ9GZX7 198 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 TMEM222Q9H0R3 208 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 CXorf21Q9HAI6 301 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 TAAR3PQ9P1P4 343 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 VPS29Q9UBQ0 182 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 CACNA1DQ01668 2161 aa2.47□□□□□ -2.01
SCFD1-209ENST00000553280 REREQ9P2R6 1566 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 DCCP43146 1447 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 A0A087WUU8 490 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 IGHV3-15A0A0B4J1V0 119 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 A0A1B0GW54 56 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 VPS37CA5D8V6 355 aaPredicted RBP2.46□□□□□ -2.02
SCFD1-209ENST00000553280 CLDN24A6NM45 220 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 LST1O00453 97 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 CHP2O43745 196 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 IGHV1-69P01742 117 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 FAM228BP0C875 321 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 GZMBP10144 247 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 RPL27AP46776 148 aaKnown RBP2.46□□□□□ -2.02
SCFD1-209ENST00000553280 HAAOP46952 286 aa2.46□□□□□ -2.02
SCFD1-209ENST00000553280 GABRA2P47869 451 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms