RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 FBXL7Q9UJT9 491 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 RNF150Q9ULK6 438 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 BOKQ9UMX3 212 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-214ENST00000552783 SPTBN1Q01082 2364 aaKnown RBP4.08□□□□□ -1.76
LIMA1-214ENST00000552783 PIEZO2Q9H5I5 2752 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 HEATR1Q9H583 2144 aaKnown RBP4.08□□□□□ -1.76
LIMA1-214ENST00000552783 IGLV3-12A0A075B6K2 115 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 PMS2P5A8MQ11 134 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 CCL25O15444 150 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 SPINK4O60575 86 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 ZG16O60844 167 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 TNFSF13O75888 250 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 KRASP01116 189 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 TFF1P04155 84 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 GRPP07492 148 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 UMODP07911 640 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 COX6A1P12074 109 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 G6PCP35575 357 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 BRWD1-AS2P59051 145 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 FGF12P61328 243 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 GAGE1Q13065 139 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 PRDX4Q13162 271 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 FBXW9Q5XUX1 488 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 TEX43Q6ZNM6 134 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 Q6ZS49 121 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 CXorf67Q86X51 503 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-214ENST00000552783 TUSC5Q8IXB3 177 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 GCNT2Q8N0V5 402 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 FGFRL1Q8N441 504 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 C11orf42Q8N5U0 333 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 CNEP1R1Q8N9A8 125 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 CMTM2Q8TAZ6 248 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 DEPPQ9NTK1 212 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 APC2O95996 2303 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 ABCA1O95477 2261 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 TRAV34A0A0B4J273 112 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 DUXBA0A1W2PPF3 345 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 ANKRD30BLA7E2S9 258 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 RRHO14718 337 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 CLDN14O95500 239 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 CELA3AP09093 270 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 FKBP2P26885 142 aaKnown RBP4.08□□□□□ -1.76
LIMA1-214ENST00000552783 RAB7AP51149 207 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 RBX1P62877 108 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 RPL30P62888 115 aaKnown RBP4.08□□□□□ -1.76
LIMA1-214ENST00000552783 ANKRD39Q53RE8 183 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 KRTCAP3Q53RY4 240 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 C6orf15Q6UXA7 325 aaPredicted RBP4.08□□□□□ -1.76
LIMA1-214ENST00000552783 TMEM14EPQ6UXP3 125 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 ERASQ7Z444 233 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 Q8NFD4 153 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 RCHY1Q96PM5 261 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 ARRDC1-AS1Q9H2J1 176 aa4.08□□□□□ -1.76
LIMA1-214ENST00000552783 ARFGEF3Q5TH69 2177 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 TACC2O95359 2948 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF716A6NP11 495 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 K7EN84 100 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 K7ESF4 209 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 IFNA1P01562 189 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CD82P27701 267 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 SRP14P37108 136 aaKnown RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 MAGEA5P43359 124 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 HBG1P69891 147 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 HBG2P69892 147 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 SLC35B1P78383 322 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ARG2P78540 354 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ZNF816Q0VGE8 651 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 KIAA1644Q3SXP7 199 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 PMS2CLQ68D20 193 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ATOH7Q8N100 152 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 OCC1Q8TAD7 63 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 APH1AQ96BI3 265 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ANAPC16Q96DE5 110 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 NEIL1Q96FI4 390 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 C20orf144Q9BQM9 153 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 NPCDR1Q9BY65 106 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 TRAPPC2LQ9UL33 140 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CBY1Q9Y3M2 126 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CTXND1A0A1B0GTU2 59 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 SCO2A0A1W2PP80 73 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CA6P23280 308 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CHRNB4P30926 498 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 HOXC12P31275 282 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CEACAM8P31997 349 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 PPP1CBP62140 327 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 TRIP6Q15654 476 aaKnown RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 MRPL14Q6P1L8 145 aaKnown RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 DHRS13Q6UX07 377 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 NUFIP2Q7Z417 695 aaKnown RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 SAXO1Q8IYX7 474 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 DRAM1Q8N682 238 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 OR5A2Q8NGI9 324 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 OR1L6Q8NGR2 347 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CT55Q8WUE5 264 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 PINX1Q96BK5 328 aaKnown RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 SFRP2Q96HF1 295 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 CDX2Q99626 313 aaPredicted RBP4.07□□□□□ -1.76
LIMA1-214ENST00000552783 FAM234AQ9H0X4 552 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 ZDHHC11Q9H8X9 412 aa4.07□□□□□ -1.76
LIMA1-214ENST00000552783 TMEM9BQ9NQ34 198 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms