RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TAF15Q92804 592 aaKnown RBP eCLIP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 SNURFLB1AK76 121 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 KBTBD11O94819 623 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 IGLV3-19P01714 112 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 LINC00271P0C7V0 271 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 NUTF2P61970 127 aaKnown RBP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 CACNG7P62955 275 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 MEF2CQ06413 473 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 IGSF11Q5DX21 431 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 IBA57Q5T440 356 aaKnown RBP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 ZNF660Q6AZW8 331 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 SPACA5Q96QH8 159 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 TMEM242Q9NWH2 141 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 RABAC1Q9UI14 185 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 FUT9Q9Y231 359 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 SYNGR3O43761 229 aa6.71□□□□□ -1.34
VPS13D-211ENST00000543710 MEF2BQ02080 365 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 ZNF501Q96CX3 271 aaPredicted RBP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 RALYQ9UKM9 306 aaKnown RBP6.71□□□□□ -1.34
VPS13D-211ENST00000543710 GON4LQ3T8J9 2241 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 IGLV3-32A0A0A0MS00 114 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 ADRA2AP08913 450 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 CA7P43166 264 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 CIRBPQ14011 172 aaKnown RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 OR10J3Q5JRS4 329 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 EEF1AKMT3Q96AZ1 226 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 KCNS1Q96KK3 526 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 HARBI1Q96MB7 349 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 CEACAM18A8MTB9 384 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 SS18L1O75177 396 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 GCM2O75603 506 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 IL18BPO95998 194 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 MUC1P15941 1255 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 CCL1P22362 96 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 MFAP4P55083 255 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 LINC00114Q6XXX2 140 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 OR10AG1Q8NH19 301 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 CTHRC1Q96CG8 243 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 DOK5Q9P104 306 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 LOC105371242A0A075B767 164 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 ODAMA1E959 279 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 H7C1H1 209 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 NMBP08949 121 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 FAM157CP0CG43 387 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 VDAC2P45880 294 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 SP6Q3SY56 376 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 GVQW1Q8N7I0 195 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 OR10S1Q8NGN2 331 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 ADAT3Q96EY9 351 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 DCAF16Q9NXF7 216 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 TINAGQ9UJW2 476 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 TCRBV4S1A1TA0A5B7 111 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 FOXS1O43638 330 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 PRSS1P07477 247 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 C8orf88P0DMB2 117 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 GATA3P23771 443 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 TAS2R60P59551 318 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 GAB4Q2WGN9 574 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 PLAC9Q5JTB6 97 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 ZNF362Q5T0B9 420 aaPredicted RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 EBLN2Q6P2I7 272 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 LINC01356Q8N9X3 169 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 OR10AC1Q8NH08 325 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 PRRC2BQ5JSZ5 2229 aaKnown RBP6.7□□□□□ -1.34
VPS13D-211ENST00000543710 A0A1W2PQM1 296 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 ORM2P19652 201 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 UCP2P55851 309 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 TNFRSF9Q07011 255 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 FAM106AQ4KMX7 169 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 TMEM78Q5T7P6 136 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 TCF24Q7RTU0 167 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 TUSC5Q8IXB3 177 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 AMER3Q8N944 861 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 OR5P3Q8WZ94 311 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 FAM131CQ96AQ9 280 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 PEMTQ9UBM1 199 aa6.7□□□□□ -1.34
VPS13D-211ENST00000543710 MPZL1O95297 269 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 MDP1Q86V88 176 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 IL36BQ9NZH7 164 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 ZNF256Q9Y2P7 627 aaPredicted RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 OR2J3O76001 311 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 HOXB3P14651 431 aaPredicted RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 LEPP41159 167 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 CEBPDP49716 269 aaPredicted RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 FGF8P55075 233 aaPredicted RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 HSPE1P61604 102 aaKnown RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 LYZL2Q7Z4W2 148 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 LINC00518Q8N0U6 118 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 C18orf12Q96KH6 178 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 Q96MF0 132 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 TMUB1Q9BVT8 246 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 INSIG2Q9Y5U4 225 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 HLA-DRB1P01911 266 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 CXCL3P19876 107 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 RPL27AP46776 148 aaKnown RBP6.69□□□□□ -1.34
VPS13D-211ENST00000543710 ATP5L2Q7Z4Y8 100 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 TMEM252Q8N6L7 170 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 OR52M1Q8NGK5 317 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 NEUROG1Q92886 237 aa6.69□□□□□ -1.34
VPS13D-211ENST00000543710 QTRT1Q9BXR0 403 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms