RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SVEP1	Q4LDE5	3571 aa		8.14	□□□□□ -1.11
CPSF7-221	ENST00000543545	C3orf85	A0A1B0GTC6	90 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	CLDN34	H7C241	214 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	ARPC1B	O15143	372 aa	Known RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	GPR137B	O60478	399 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	OR2F2	O95006	317 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	IGKV1-16	P04430	117 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	TCRB	P04435	133 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	SERPINE2	P07093	398 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	F2R	P25116	425 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	BTC	P35070	178 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	LPAR6	P43657	344 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	RND3	P61587	244 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	UBA52	P62987	128 aa	Known RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	SRSF2	Q01130	221 aa	Known RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	EIF4EBP1	Q13541	118 aa	Predicted RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	DCTN2	Q13561	401 aa	Known RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	PLGLA	Q15195	96 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	MMD	Q15546	238 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	TUSC1	Q2TAM9	212 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	DHRS7B	Q6IAN0	325 aa	Predicted RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	CCBE1	Q6UXH8	406 aa	Predicted RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	LIAT1	Q6ZQX7	453 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	CENPS	Q8N2Z9	138 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	OR4C13	Q8NGP0	309 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	DDB2	Q92466	427 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	RITA1	Q96K30	269 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	HARBI1	Q96MB7	349 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	RBM14	Q96PK6	669 aa	Known RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	TSNAX	Q99598	290 aa	Known RBP	8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	KIAA1456	Q9P272	454 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	FLVCR2	Q9UPI3	526 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	KCNIP3	Q9Y2W7	256 aa		8.13	□□□□□ -1.11
CPSF7-221	ENST00000543545	TRAV6	A0A075B6T7	132 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	FAM181B	A6NEQ2	426 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	RAMP3	O60896	148 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	RNASE1	P07998	156 aa	Known RBP	8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	VAMP1	P23763	118 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	SLC6A1	P30531	599 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	LGALS7	P47929	136 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	TAS2R31	P59538	309 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	EBI3	Q14213	229 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	TRIM16L	Q309B1	348 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	SP6	Q3SY56	376 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	FBLN7	Q53RD9	439 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	C9orf152	Q5JTZ5	239 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	TCTEX1D1	Q8N7M0	179 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	OR8H1	Q8NGG4	311 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	RNF5	Q99942	180 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	RASL11B	Q9BPW5	248 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	NAA60	Q9H7X0	242 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	BEX1	Q9HBH7	125 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	PALMD	Q9NP74	551 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	MOB4	Q9Y3A3	225 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	NUBP2	Q9Y5Y2	271 aa		8.12	□□□□□ -1.11
CPSF7-221	ENST00000543545	CRYM-AS1	A6NIL9	109 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545		H0Y980	276 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545		M0QZK8	103 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	NBR2	O15453	112 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	RBFOX2	O43251	390 aa	Known RBP eCLIP	8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	CHST1	O43916	411 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	HPRT1	P00492	218 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	HRAS	P01112	189 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	H2AFB2	P0C5Z0	115 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	OR5AC1	P0C628	307 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	ANXA3	P12429	323 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	RPA2	P15927	270 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	ANXA7	P20073	488 aa	Known RBP	8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	CNTFR	P26992	372 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	F2RL1	P55085	397 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	RAB25	P57735	213 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	ERVK-16	P61578	105 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	VMA21	Q3ZAQ7	101 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	C4orf46	Q504U0	113 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	TMEM177	Q53S58	311 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	ARSJ	Q5FYB0	599 aa	Predicted RBP	8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	PLET1	Q6UQ28	207 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	SSX9	Q7RTT3	188 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	C16orf82	Q7Z2V1	217 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	NRARP	Q7Z6K4	114 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545		Q8N6K4	173 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	DMBX1	Q8NFW5	382 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	OSR1	Q8TAX0	266 aa	Predicted RBP	8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	CLCC1	Q96S66	551 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	AIFM2	Q9BRQ8	373 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	NPFFR1	Q9GZQ6	430 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	C20orf85	Q9H1P6	137 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	FBXL15	Q9H469	300 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	NUDT15	Q9NV35	164 aa		8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	METTL1	Q9UBP6	276 aa	Known RBP	8.11	□□□□□ -1.11
CPSF7-221	ENST00000543545	SH2D7	A6NKC9	451 aa	Predicted RBP	8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	RRH	O14718	337 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	SLC25A17	O43808	307 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	B3GALNT1	O75752	331 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	ATG12	O94817	140 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	S1PR2	O95136	353 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	NQO2	P16083	231 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	BRWD1-AS2	P59051	145 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	DHODH	Q02127	395 aa		8.1	□□□□□ -1.11
CPSF7-221	ENST00000543545	PSG5	Q15238	335 aa		8.1	□□□□□ -1.11

Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms