RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 LAIR2Q6ISS4 152 aa11.7□□□□□ -0.54
RTN3-211ENST00000542238 LINC00322Q6ZN03 302 aaPredicted RBP11.7□□□□□ -0.54
RTN3-211ENST00000542238 CEACAM19Q7Z692 300 aa11.7□□□□□ -0.54
RTN3-211ENST00000542238 CMSS1Q9BQ75 279 aaKnown RBP11.7□□□□□ -0.54
RTN3-211ENST00000542238 NEURL2Q9BR09 285 aa11.7□□□□□ -0.54
RTN3-211ENST00000542238 YTHDF1Q9BYJ9 559 aaKnown RBP11.7□□□□□ -0.54
RTN3-211ENST00000542238 FKBP14Q9NWM8 211 aa11.7□□□□□ -0.54
RTN3-211ENST00000542238 MSGN1A6NI15 193 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 TRDCB7Z8K6 153 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 MPPED1O15442 326 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 APELAP0DMC3 54 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 MECP2P51608 486 aaKnown RBP11.69□□□□□ -0.54
RTN3-211ENST00000542238 RTL8BQ17RB0 113 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 KCTD21Q4G0X4 260 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 RNLSQ5VYX0 342 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 FAM89BQ8N5H3 189 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 PLGRKTQ9HBL7 147 aa11.69□□□□□ -0.54
RTN3-211ENST00000542238 IGKV1-6A0A0C4DH72 117 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 MRPS14O60783 128 aaKnown RBP11.68□□□□□ -0.54
RTN3-211ENST00000542238 OR9G9P0C7N8 305 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 RRASP10301 218 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 CD37P11049 281 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 MRPS15P82914 257 aaKnown RBP11.68□□□□□ -0.54
RTN3-211ENST00000542238 P2RY14Q15391 338 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 VMA21Q3ZAQ7 101 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 CD300EQ496F6 205 aaPredicted RBP11.68□□□□□ -0.54
RTN3-211ENST00000542238 TMEM177Q53S58 311 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 ADAD2Q8NCV1 583 aaKnown RBP11.68□□□□□ -0.54
RTN3-211ENST00000542238 BPIFB6Q8NFQ5 453 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 TSPAN14Q8NG11 270 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 OR4A4PQ8NGN8 299 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 DYNLRB2Q8TF09 96 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 ARHGAP5-AS1Q96IT6 56 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 MND1Q9BWT6 205 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 OR2D2Q9H210 308 aa11.68□□□□□ -0.54
RTN3-211ENST00000542238 FAM223BA6NKX1 122 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 TUSC2O75896 110 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 RHOGP84095 191 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 ATP5G2Q06055 141 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 TPBGQ13641 420 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 EXOSC2Q13868 293 aaKnown RBP11.67□□□□□ -0.54
RTN3-211ENST00000542238 TNXAQ16473 311 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 FAM223AQ8IWN6 122 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 TEX45Q8NA69 505 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 OR56B1Q8NGI3 324 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 OR10J5Q8NHC4 309 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 PECRQ9BY49 303 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 DUSP21Q9H596 190 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 SRD5A3Q9H8P0 318 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 SDHAF2Q9NX18 166 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 BLOC1S6Q9UL45 172 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 HYDINQ4G0P3 5121 aa11.67□□□□□ -0.54
RTN3-211ENST00000542238 FOXI3A8MTJ6 420 aaPredicted RBP11.66□□□□□ -0.54
RTN3-211ENST00000542238 OR11H12B2RN74 326 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 ZNF701M0R085 212 aaPredicted RBP11.66□□□□□ -0.54
RTN3-211ENST00000542238 BMPR1BO00238 502 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 SLC17A2O00624 439 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 BET1O15155 118 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 CD7P09564 240 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 UCHL1P09936 223 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 RANBP1P43487 201 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 TMEM50BP56557 158 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 PRSS8Q16651 343 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 GUCA2BQ16661 112 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 DEFB125Q8N687 156 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 SRSF12Q8WXF0 261 aaKnown RBP11.66□□□□□ -0.54
RTN3-211ENST00000542238 KCTD12Q96CX2 325 aaKnown RBP11.66□□□□□ -0.54
RTN3-211ENST00000542238 AKIP1Q9NQ31 210 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 SCN3BQ9NY72 215 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 RSL24D1Q9UHA3 163 aaKnown RBP11.66□□□□□ -0.54
RTN3-211ENST00000542238 TPRKBQ9Y3C4 175 aa11.66□□□□□ -0.54
RTN3-211ENST00000542238 RBM7Q9Y580 266 aaKnown RBP11.66□□□□□ -0.54
RTN3-211ENST00000542238 A0A087WXM4 84 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 A0A1B0GVG6 124 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 RBMY1BA6NDE4 496 aaKnown RBP11.65□□□□□ -0.54
RTN3-211ENST00000542238 RBMY1EA6NEQ0 496 aaKnown RBP11.65□□□□□ -0.54
RTN3-211ENST00000542238 CCDC160A6NGH7 325 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 SRRM4A7MD48 611 aaKnown RBP11.65□□□□□ -0.54
RTN3-211ENST00000542238 ZNF785A8K8V0 405 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 FABP7O15540 132 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 RBMXL2O75526 392 aaKnown RBP11.65□□□□□ -0.54
RTN3-211ENST00000542238 ACTL6BO94805 426 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 CD3GP09693 182 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 RBMY1DP0C7P1 496 aaKnown RBP11.65□□□□□ -0.54
RTN3-211ENST00000542238 CRHBPP24387 322 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 GABARAPL2P60520 117 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 UBE2KP61086 200 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 RAB11BQ15907 218 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 FAM209BQ5JX69 171 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 ACOT12Q8WYK0 555 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 ADTRPQ96IZ2 230 aa11.65□□□□□ -0.54
RTN3-211ENST00000542238 ZNF230Q9UIE0 474 aaPredicted RBP11.65□□□□□ -0.54
RTN3-211ENST00000542238 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.64□□□□□ -0.55
RTN3-211ENST00000542238 CREBL2O60519 120 aaPredicted RBP11.64□□□□□ -0.55
RTN3-211ENST00000542238 SPHARQ15513 63 aa11.64□□□□□ -0.55
RTN3-211ENST00000542238 MRGPRG-AS1Q2M3A8 158 aa11.64□□□□□ -0.55
RTN3-211ENST00000542238 DEFB114Q30KQ6 69 aa11.64□□□□□ -0.55
RTN3-211ENST00000542238 IGSF11Q5DX21 431 aa11.64□□□□□ -0.55
RTN3-211ENST00000542238 NECAP1Q8NC96 275 aa11.64□□□□□ -0.55
RTN3-211ENST00000542238 SPIN2AQ99865 258 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms