RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 HLA-DQA2P01906 255 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 LGALS4P56470 323 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 FA2HQ7L5A8 372 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 SCCPDHQ8NBX0 429 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 NDFIP1Q9BT67 221 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 MS4A5Q9H3V2 200 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 MTCH1Q9NZJ7 389 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 NAT8BQ9UHF3 227 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 NXT1Q9UKK6 140 aaKnown RBP8□□□□□ -1.13
CLIP1-214ENST00000540539 A0A1W2PPM0 123 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 A0A1W2PPV4 95 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 PAGE4O60829 102 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 SRSF10O75494 262 aaKnown RBP8□□□□□ -1.13
CLIP1-214ENST00000540539 ISG15P05161 165 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 HTR1DP28221 377 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 SRIP30626 198 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 GPR12P47775 334 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 PAX9P55771 341 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 MRPS21P82921 87 aaKnown RBP8□□□□□ -1.13
CLIP1-214ENST00000540539 ACKR1Q16570 336 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 ZNF585BQ52M93 769 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 ADAMTSL5Q6ZMM2 481 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 ZAR1Q86SH2 424 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 KIR3DL3Q8N743 410 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 LRRC75AQ8NAA5 344 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 SCRT2Q9NQ03 307 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 SPANXB1Q9NS25 103 aaPredicted RBP8□□□□□ -1.13
CLIP1-214ENST00000540539 IL36GQ9NZH8 169 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 HSPB8Q9UJY1 196 aa8□□□□□ -1.13
CLIP1-214ENST00000540539 MRPS17Q9Y2R5 130 aaKnown RBP8□□□□□ -1.13
CLIP1-214ENST00000540539 MED12LQ86YW9 2145 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 TRBV9A0A0B4J1U6 114 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 A0A0J9YY10 115 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 A0A1B0GX78 115 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 ISLRO14498 428 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 SNAI2O43623 268 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 CHST1O43916 411 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 OR3A4PP47883 348 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 EMDP50402 254 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 FXYD4P59646 89 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 SERF2P84101 59 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 C2orf91Q6ZV80 131 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.99□□□□□ -1.13
CLIP1-214ENST00000540539 ZNF439Q8NDP4 499 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 OR52E5Q8NH55 327 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 OR1F12Q8NHA8 337 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 BAHD1Q8TBE0 780 aaPredicted RBP7.99□□□□□ -1.13
CLIP1-214ENST00000540539 C18orf32Q8TCD1 76 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 DOK4Q8TEW6 326 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 NUS1Q96E22 293 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 OR2A5Q96R48 311 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 SPAG8Q99932 426 aaPredicted RBP7.99□□□□□ -1.13
CLIP1-214ENST00000540539 GNB1LQ9BYB4 327 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 SLC25A22Q9H936 323 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 HES4Q9HCC6 221 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 CENPMQ9NSP4 180 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 MBNL3Q9NUK0 354 aaKnown RBP7.99□□□□□ -1.13
CLIP1-214ENST00000540539 R4GMQ9 66 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 MUC3AQ02505 3323 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 SHANK1Q9Y566 2161 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 SCN3AQ9NY46 2000 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 TRBV20OR9-2A0A075B6H5 130 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 A4D1N5 150 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 SLC17A3O00476 420 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 NAPSAO96009 420 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 PRNPP04156 253 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 CEACAM5P06731 702 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 PTGDSP41222 190 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 GNG4P50150 75 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 TMPRSS3P57727 454 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 GNB1P62873 340 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 POM121L1PQ3SYA9 428 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 TMEM97Q5BJF2 176 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 OR4N5Q8IXE1 308 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 C8orf44Q96CB5 159 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 FOXQ1Q9C009 403 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 STRADBQ9C0K7 418 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 IL36BQ9NZH7 164 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 B4GALT7Q9UBV7 327 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 B4GALT6Q9UBX8 382 aa7.99□□□□□ -1.13
CLIP1-214ENST00000540539 BMPR1BO00238 502 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 CA1P00915 261 aaPredicted RBP7.98□□□□□ -1.13
CLIP1-214ENST00000540539 HIST1H1EP10412 219 aaKnown RBP7.98□□□□□ -1.13
CLIP1-214ENST00000540539 OR1D5P58170 312 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 SRSF6Q13247 344 aaKnown RBP7.98□□□□□ -1.13
CLIP1-214ENST00000540539 ABHD17BQ5VST6 288 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 Q6ZS52 159 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 OR10G6Q8NH81 332 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 RAX2Q96IS3 184 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 MCTS1Q9ULC4 181 aaKnown RBP7.98□□□□□ -1.13
CLIP1-214ENST00000540539 FREM3P0C091 2139 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 TRAV38-1A0A0B4J264 116 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 HELTA6NFD8 242 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 C11orf94C9JXX5 98 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 M0QXV9 152 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 ADAM20O43506 726 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 NDUFB4O95168 129 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 RENP00797 406 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 CRYAAP02489 173 aa7.98□□□□□ -1.13
CLIP1-214ENST00000540539 HIST1H1TP22492 207 aaPredicted RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms