RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CD200P41217 278 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 REG1BP48304 166 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 R3HDM4Q96D70 268 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 NIPSNAP3BQ9BS92 247 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 AGMATQ9BSE5 352 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 PGPEP1LA6NFU8 196 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 HBG1P69891 147 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 HBG2P69892 147 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 FFAR4Q5NUL3 377 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 PRAMEF5Q5TYX0 476 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 GFI1BQ5VTD9 330 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 IL22RA2Q969J5 263 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 MUCL1Q96DR8 90 aa14.04□□□□□ -0.16
USP28-208ENST00000540438 NDUFA6P56556 154 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 TCF15Q12870 199 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 ADIRFQ15847 76 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 C15orf54Q8N8G6 183 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 OR51G1Q8NGK1 321 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 SSMEM1Q8WWF3 244 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 MALRD1Q5VYJ5 2156 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 TMEM210A6NLX4 147 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 RRHO14718 337 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 IGHV3-48P01763 117 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 MT-ND4LP03901 98 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 LRRC75BQ2VPJ9 315 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 SLC35E4Q6ICL7 350 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 LYG1Q8N1E2 194 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 LSM10Q969L4 123 aaKnown RBP14.03□□□□□ -0.16
USP28-208ENST00000540438 IFT22Q9H7X7 185 aa14.03□□□□□ -0.16
USP28-208ENST00000540438 DUXBA0A1W2PPF3 345 aa14.02□□□□□ -0.16
USP28-208ENST00000540438 NDUFA2O43678 99 aa14.02□□□□□ -0.16
USP28-208ENST00000540438 ZNF737O75373 536 aa14.02□□□□□ -0.16
USP28-208ENST00000540438 RBMXL3Q8N7X1 1067 aaKnown RBP14.02□□□□□ -0.16
USP28-208ENST00000540438 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.02□□□□□ -0.16
USP28-208ENST00000540438 KLF3P57682 345 aaPredicted RBP14.02□□□□□ -0.17
USP28-208ENST00000540438 CATR1Q13166 79 aa14.02□□□□□ -0.17
USP28-208ENST00000540438 MOB3BQ86TA1 216 aa14.02□□□□□ -0.17
USP28-208ENST00000540438 HEYLQ9NQ87 328 aaPredicted RBP14.02□□□□□ -0.17
USP28-208ENST00000540438 C15orf65H3BRN8 121 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 ABHD17AQ96GS6 310 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 AHRRA9YTQ3 701 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 NDUFB7P17568 137 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 FAM90A1Q86YD7 464 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 LFNGQ8NES3 379 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 OR10P1Q8NGE3 313 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 OR10G4Q8NGN3 311 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 OR10G9Q8NGN4 311 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 OR10G7Q8NGN6 311 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 MEGF10Q96KG7 1140 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 SPG11Q96JI7 2443 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 LOC102723971A0A1B0GUV8 181 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 TMPRSS2O15393 492 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 TRGC2P03986 189 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 MORN2Q502X0 79 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 OR4F5Q8NH21 305 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 NEUROG1Q92886 237 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 OR4F4Q96R69 305 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 COA4Q9NYJ1 87 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 PTPRBP23467 1997 aa14.01□□□□□ -0.17
USP28-208ENST00000540438 IGLV1-44P01699 117 aa14□□□□□ -0.17
USP28-208ENST00000540438 BCL2P10415 239 aa14□□□□□ -0.17
USP28-208ENST00000540438 FAM90A2PQ658T7 463 aa14□□□□□ -0.17
USP28-208ENST00000540438 CDPF1Q6NVV7 123 aa14□□□□□ -0.17
USP28-208ENST00000540438 COMMD1Q8N668 190 aa14□□□□□ -0.17
USP28-208ENST00000540438 SNIP1Q8TAD8 396 aaKnown RBP14□□□□□ -0.17
USP28-208ENST00000540438 ZNF891A8MT65 544 aaPredicted RBP14□□□□□ -0.17
USP28-208ENST00000540438 C1QTNF9BB2RNN3 333 aa14□□□□□ -0.17
USP28-208ENST00000540438 PAGE4O60829 102 aa14□□□□□ -0.17
USP28-208ENST00000540438 APELAP0DMC3 54 aa14□□□□□ -0.17
USP28-208ENST00000540438 KITLGP21583 273 aa14□□□□□ -0.17
USP28-208ENST00000540438 IGFL2Q6UWQ7 119 aa14□□□□□ -0.17
USP28-208ENST00000540438 GFOD1Q9NXC2 390 aa14□□□□□ -0.17
USP28-208ENST00000540438 NPIPB11E5RHQ5 1161 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 DUTP33316 252 aaKnown RBP13.99□□□□□ -0.17
USP28-208ENST00000540438 MSMO1Q15800 293 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 MLANAQ16655 118 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 HSPB7Q9UBY9 170 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 DYSFO75923 2080 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 IFNA4P05014 189 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 TNFAIP6P98066 277 aaPredicted RBP13.99□□□□□ -0.17
USP28-208ENST00000540438 ZNF506Q5JVG8 444 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 ASPHD1Q5U4P2 390 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 CST9LP1Q5W188 147 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 SPNS3Q6ZMD2 512 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 RAB24Q969Q5 203 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 TVP23CQ96ET8 276 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 POM121Q96HA1 1249 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 A0A0U1RQK1 487 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 RNF212BA8MTL3 300 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 SRRM5B3KS81 715 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 PRB4P10163 310 aaPredicted RBP13.99□□□□□ -0.17
USP28-208ENST00000540438 NKX6-1P78426 367 aaPredicted RBP13.99□□□□□ -0.17
USP28-208ENST00000540438 FOXC1Q12948 553 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 ELOBQ15370 118 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 TMEM14EPQ6UXP3 125 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 OR4A16Q8NH70 328 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 IGFBPL1Q8WX77 278 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 DERL1Q9BUN8 251 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 ELOVL1Q9BW60 279 aa13.99□□□□□ -0.17
USP28-208ENST00000540438 NIT2Q9NQR4 276 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms