RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 STUMQ69YW2 141 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 TMED6Q8WW62 240 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 ABHD14BQ96IU4 210 aa9.8□□□□□ -0.84
CLIP1-208ENST00000537004 A0A0G2JRQ6 117 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 A0A1B0GW55 424 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 PCP4L1A6NKN8 68 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 TEX46H3BTG2 121 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 GPR137BO60478 399 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 IGKV1-39P01597 117 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 IGKV1D-39P04432 117 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4L2P0CJ85 424 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4L3P0CJ86 424 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4L4P0CJ87 422 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4L5P0CJ88 424 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4L6P0CJ89 424 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4L7P0CJ90 424 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 SELLP14151 372 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 IRF2P14316 349 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 EPHA1P21709 976 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 EDDM3BP56851 147 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 POLR2GP62487 172 aaKnown RBP eCLIP9.79□□□□□ -0.84
CLIP1-208ENST00000537004 EIF5AP63241 154 aaKnown RBP9.79□□□□□ -0.84
CLIP1-208ENST00000537004 S100A12P80511 92 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 ZNF585BQ52M93 769 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 C1orf229Q6ZS94 237 aaPredicted RBP9.79□□□□□ -0.84
CLIP1-208ENST00000537004 ZBTB34Q8NCN2 500 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 RNASE11Q8TAA1 199 aaKnown RBP9.79□□□□□ -0.84
CLIP1-208ENST00000537004 SDSLQ96GA7 329 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 C5orf30Q96GV9 206 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 SMIM3Q9BZL3 60 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 MAGT1Q9H0U3 335 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 C11orf1Q9H5F2 150 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4Q9UBX2 424 aa9.79□□□□□ -0.84
CLIP1-208ENST00000537004 SSSCA1O60232 199 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 GAPDHP04406 335 aaKnown RBP9.78□□□□□ -0.84
CLIP1-208ENST00000537004 PVALBP20472 110 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-208ENST00000537004 EIF4EBP1Q13541 118 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-208ENST00000537004 CLRN3Q8NCR9 226 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 DEFB108BQ8NET1 73 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 LSM10Q969L4 123 aaKnown RBP9.78□□□□□ -0.84
CLIP1-208ENST00000537004 GPR146Q96CH1 333 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 RAB39BQ96DA2 213 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 LPAR3Q9UBY5 353 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 A0A1B0GU03 582 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 JTBO76095 146 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 SLC25A6P12236 298 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 MUC1P15941 1255 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-208ENST00000537004 HNF1AP20823 631 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 ID3Q02535 119 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 MSMO1Q15800 293 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 LTC4SQ16873 150 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 DUX4L9Q6RFH8 374 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-208ENST00000537004 BSCL2Q96G97 398 aaPredicted RBP9.78□□□□□ -0.84
CLIP1-208ENST00000537004 GAFA1Q96PS6 74 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 NCOR1P1Q9H4R4 102 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 MMP26Q9NRE1 261 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 OR6C3Q9NZP0 311 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 PSG11Q9UQ72 335 aa9.78□□□□□ -0.84
CLIP1-208ENST00000537004 LOC105371242A0A075B767 164 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 ZNF98A6NK75 572 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 LRRC30A6NM36 301 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 FGF16O43320 207 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 PITX3O75364 302 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 NXPH3O95157 252 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 IGKV1-5P01602 117 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 GYPAP02724 150 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 SRP14P37108 136 aaKnown RBP9.77□□□□□ -0.85
CLIP1-208ENST00000537004 HOXA1P49639 335 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-208ENST00000537004 AKR1C2P52895 323 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 IZUMO4Q1ZYL8 232 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 TEX36Q5VZQ5 186 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 OR2C3Q8N628 320 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 RNF141Q8WVD5 230 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 CCL13Q99616 98 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 AGMATQ9BSE5 352 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 GNG12Q9UBI6 72 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 JPT1Q9UK76 154 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 F2RL2O00254 374 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 ST8SIA5O15466 376 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 VAMP2P63027 116 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 NHLH2Q02577 135 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 CATR1Q13166 79 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 EIF5AL1Q6IS14 154 aaKnown RBP9.77□□□□□ -0.85
CLIP1-208ENST00000537004 BTNL3Q6UXE8 466 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 ZNF788Q6ZQV5 615 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 Q6ZRM9 215 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 FAM216BQ8N7L0 139 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 UBAC2Q8NBM4 344 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 EDARADDQ8WWZ3 215 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 MS4A7Q9GZW8 240 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-208ENST00000537004 PATZ1Q9HBE1 687 aaKnown RBP9.77□□□□□ -0.85
CLIP1-208ENST00000537004 LYRM2Q9NU23 88 aaPredicted RBP9.77□□□□□ -0.85
CLIP1-208ENST00000537004 CALYQ9NYX4 217 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 CACNG5Q9UF02 275 aa9.77□□□□□ -0.85
CLIP1-208ENST00000537004 TRAV20A0A0B4J274 112 aa9.76□□□□□ -0.85
CLIP1-208ENST00000537004 FAM24AA6NFZ4 105 aa9.76□□□□□ -0.85
CLIP1-208ENST00000537004 DNASE2O00115 360 aaPredicted RBP9.76□□□□□ -0.85
CLIP1-208ENST00000537004 WRBO00258 174 aa9.76□□□□□ -0.85
CLIP1-208ENST00000537004 RAMP3O60896 148 aa9.76□□□□□ -0.85
CLIP1-208ENST00000537004 CGB3P0DN86 165 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms