RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 APOC4-APOC2K7ER74 178 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 M0QZK8 103 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 ENTPD5O75356 428 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 APOC2P02655 101 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 NR2C1P13056 603 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 PRKACAP17612 351 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 RAB4AP20338 218 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 F2RP25116 425 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 BCAP31P51572 246 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 CCR6P51684 374 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 PRR3P79522 188 aaKnown RBP2.35□□□□□ -2.03
CD44-235ENST00000532339 UAP1Q16222 522 aaPredicted RBP2.35□□□□□ -2.03
CD44-235ENST00000532339 GPR107Q5VW38 600 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 FAM9CQ8IZT9 166 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 DYNAPQ8N1N2 210 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 MMGT1Q8N4V1 131 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 C19orf18Q8NEA5 215 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 OR11L1Q8NGX0 322 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 CHAC1Q9BUX1 264 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 NDEL1Q9GZM8 345 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 PIGUQ9H490 435 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 FBXO6Q9NRD1 293 aaPredicted RBP2.35□□□□□ -2.03
CD44-235ENST00000532339 ACER3Q9NUN7 267 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 TAS2R13Q9NYV9 303 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 KAAG1Q9UBP8 84 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 POFUT2Q9Y2G5 429 aa2.35□□□□□ -2.03
CD44-235ENST00000532339 hCG_1818297A0A087WSY0 165 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 TRBV6-6A0A0A6YYG2 114 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 TRAV38-1A0A0B4J264 116 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 TMEM120BA0PK00 339 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 SERPINE3A8MV23 424 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 TMEM114B3SHH9 223 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 BOLA2-SMG1P6H3BVE0 249 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 UPK1AO00322 258 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 CA11O75493 328 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 KCNK2O95069 426 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 FABP3P05413 133 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 KLK1P06870 262 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 CRYGCP07315 174 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 PSG2P11465 335 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 RAB3BP20337 219 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 MSR1P21757 451 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 CCNOP22674 350 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 MPIP34949 423 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 APLNRP35414 380 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 CEACAM3P40198 252 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 PPP1CBP62140 327 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 PITPNAQ00169 270 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 RUNX1Q01196 453 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 C18orf21Q32NC0 220 aaPredicted RBP2.34□□□□□ -2.03
CD44-235ENST00000532339 NDUFAF6Q330K2 333 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 HES5Q5TA89 166 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 FBXW12Q6X9E4 464 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 MBOAT2Q6ZWT7 520 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 ZNF767PQ75MW2 155 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 PAGE2Q7Z2X7 111 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 GRINAQ7Z429 371 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 VTCN1Q7Z7D3 282 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 DPPA2Q7Z7J5 298 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 ENTHD1Q8IYW4 607 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 TCAIMQ8N3R3 496 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 OR10AD1Q8NGE0 317 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 OR10G4Q8NGN3 311 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 ACTL9Q8TC94 416 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 APH1BQ8WW43 257 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 TMEM230Q96A57 120 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 DDIT4LQ96D03 193 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 KIFC1Q9BW19 673 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 HAUS4Q9H6D7 363 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 UVRAGQ9P2Y5 699 aa2.34□□□□□ -2.03
CD44-235ENST00000532339 TBL2Q9Y4P3 447 aaKnown RBP2.34□□□□□ -2.03
CD44-235ENST00000532339 IGLV11-55A0A075B6I3 123 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 IGHV3-74A0A0B4J1X5 117 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 IGHV3-66A0A0C4DH42 116 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 A6NDN8 102 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 I3L521 148 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 ZNF701M0R085 212 aaPredicted RBP2.33□□□□□ -2.04
CD44-235ENST00000532339 GABRPO00591 440 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 STK16O75716 305 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 IFNA21P01568 189 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 IFNA17P01571 189 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 GYPAP02724 150 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 CD74P04233 296 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 EIF4EP06730 217 aaKnown RBP2.33□□□□□ -2.04
CD44-235ENST00000532339 KRT16P08779 473 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 CEACAM6P40199 344 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 UBE2AP49459 152 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 AQP5P55064 265 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 MADCAM1Q13477 382 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 HES1Q14469 280 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 OR8B8Q15620 311 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 SLC36A2Q495M3 483 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 CLEC12AQ5QGZ9 265 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 TPTE2P1Q5T6R2 138 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 MRPL21Q7Z2W9 205 aaKnown RBP2.33□□□□□ -2.04
CD44-235ENST00000532339 UBE2DNLQ8IWF7 75 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 SLC30A8Q8IWU4 369 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 MKXQ8IYA7 352 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 ARRDC1Q8N5I2 433 aa2.33□□□□□ -2.04
CD44-235ENST00000532339 DEFB125Q8N687 156 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms