RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ZNF429	Q86V71	674 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF595	Q8IYB9	648 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	OR10P1	Q8NGE3	313 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	OR51G1	Q8NGK1	321 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	OR2K2	Q8NGT1	345 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CT45A3	Q8NHU0	189 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	CMTM2	Q8TAZ6	248 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	PIGC	Q92535	297 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	NUS1	Q96E22	293 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	S100A16	Q96FQ6	103 aa	Known RBP	4.64	□□□□□ -1.67
CD44-231	ENST00000531110	AP1S3	Q96PC3	154 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	RAB40C	Q96S21	281 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	FEV	Q99581	238 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF670	Q9BS34	389 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM39B	Q9GZU3	492 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	FAM124B	Q9H5Z6	455 aa	Predicted RBP	4.64	□□□□□ -1.67
CD44-231	ENST00000531110	NPVF	Q9HCQ7	196 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	SLC2A6	Q9UGQ3	507 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	IL36A	Q9UHA7	158 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	PRO0628	Q9UI54	55 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	PROCR	Q9UNN8	238 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	SCML2	Q9UQR0	700 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	WASHC3	Q9Y3C0	194 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	NOP16	Q9Y3C1	178 aa	Known RBP	4.64	□□□□□ -1.67
CD44-231	ENST00000531110	MCM3AP	O60318	1980 aa		4.64	□□□□□ -1.67
CD44-231	ENST00000531110	LOC102723996	A0A087X1L8	192 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF816-ZNF321P	A0A0X1KG74	233 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF840P	A6NDX5	716 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110		H0YJW9	148 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	NBR2	O15453	112 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ZG16	O60844	167 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF217	O75362	1048 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	HSBP1	O75506	76 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	KBTBD11	O94819	623 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	SOX14	O95416	240 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	SLC2A10	O95528	541 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	SCT	P09683	121 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	RGR	P47804	291 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	STC1	P52823	247 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	SLC25A1	P53007	311 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	GGTLC2	Q14390	218 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	HLA-DRB5	Q30154	266 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	TCEAL5	Q5H9L2	206 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	TEX36	Q5VZQ5	186 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	OTP	Q5XKR4	325 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	KCNIP4	Q6PIL6	250 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ARL9	Q6T311	187 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	GFRAL	Q6UXV0	394 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF621	Q6ZSS3	439 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	SLC25A42	Q86VD7	318 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM219	Q86XT9	240 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF441	Q8N8Z8	693 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM229B	Q8NBD8	167 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	OR2T33	Q8NG76	320 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	OR5AR1	Q8NGP9	310 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	VSTM2A	Q8TAG5	236 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF502	Q8TBZ5	544 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM54	Q969K7	222 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	SDF2	Q99470	211 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	MS4A6A	Q9H2W1	248 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	FNDC4	Q9H6D8	234 aa	Predicted RBP	4.63	□□□□□ -1.67
CD44-231	ENST00000531110	PRTFDC1	Q9NRG1	225 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	POLDIP2	Q9Y2S7	368 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	MED31	Q9Y3C7	131 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110		V9GYY9	64 aa		4.63	□□□□□ -1.67
CD44-231	ENST00000531110	TDRD15	B5MCY1	1934 aa	Known RBP	4.63	□□□□□ -1.67
CD44-231	ENST00000531110	SBF2	Q86WG5	1849 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	NYNRIN	Q9P2P1	1898 aa	Known RBP	4.62	□□□□□ -1.67
CD44-231	ENST00000531110	SCN8A	Q9UQD0	1980 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	C5orf49	A4QMS7	147 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	ANTXRL	A6NF34	631 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	MSGN1	A6NI15	193 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	CEACAM18	A8MTB9	384 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	ST8SIA3	O43173	380 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	WISP3	O95389	354 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-231	ENST00000531110	HRAS	P01112	189 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	GYPA	P02724	150 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	LIMS3	P0CW19	117 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	LIMS4	P0CW20	117 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PVR	P15151	417 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PGC	P20142	388 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	CDK2	P24941	298 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PSMB4	P28070	264 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	GRPR	P30550	384 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	APOBEC1	P41238	236 aa	Known RBP	4.62	□□□□□ -1.67
CD44-231	ENST00000531110	EFNB2	P52799	333 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	PAFAH1B3	Q15102	231 aa	Known RBP	4.62	□□□□□ -1.67
CD44-231	ENST00000531110	OR10J3	Q5JRS4	329 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	TMEM215	Q68D42	235 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF322	Q6U7Q0	402 aa	Predicted RBP	4.62	□□□□□ -1.67
CD44-231	ENST00000531110	GLIPR1L1	Q6UWM5	242 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	STAC2	Q6ZMT1	411 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	CMC1	Q7Z7K0	106 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	OSR2	Q8N2R0	312 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	KIR3DL3	Q8N743	410 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	ZNF709	Q8N972	641 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110		Q8N976	141 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	OR2M3	Q8NG83	312 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	OR10V1	Q8NGI7	309 aa		4.62	□□□□□ -1.67
CD44-231	ENST00000531110	OR4C16	Q8NGL9	310 aa		4.62	□□□□□ -1.67

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