RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 OR2F1Q13607 317 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 ZNF345Q14585 488 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 BEND2Q8NDZ0 799 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 OR13D1Q8NGV5 346 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 OR4S2Q8NH73 311 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 RNF126Q9BV68 326 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 COA4Q9NYJ1 87 aa17.28■□□□□ 0.36
VPS28-212ENST00000530836 IGHV2-26A0A0B4J1V2 119 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 A0A0D9SG52 128 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 KIAA1324LA8MWY0 1029 aaPredicted RBP17.27■□□□□ 0.36
VPS28-212ENST00000530836 FOXH1O75593 365 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 DEDDO75618 318 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 NUP62P37198 522 aaPredicted RBP17.27■□□□□ 0.36
VPS28-212ENST00000530836 ARHGDIBP52566 201 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 ZNF816Q0VGE8 651 aaPredicted RBP17.27■□□□□ 0.36
VPS28-212ENST00000530836 OR2B11Q5JQS5 317 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 GPR146Q96CH1 333 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 PLSCR3Q9NRY6 295 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 KPTNQ9Y664 436 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 POMT1Q9Y6A1 747 aa17.27■□□□□ 0.36
VPS28-212ENST00000530836 FCGR3BO75015 233 aa17.26■□□□□ 0.35
VPS28-212ENST00000530836 IGKV1-5P01602 117 aa17.26■□□□□ 0.35
VPS28-212ENST00000530836 MBPP02686 304 aaPredicted RBP17.26■□□□□ 0.35
VPS28-212ENST00000530836 RRASP10301 218 aa17.26■□□□□ 0.35
VPS28-212ENST00000530836 NKX2-1P43699 371 aaPredicted RBP17.26■□□□□ 0.35
VPS28-212ENST00000530836 DHRS7BQ6IAN0 325 aaPredicted RBP17.26■□□□□ 0.35
VPS28-212ENST00000530836 ACOT7LQ6ZUV0 252 aa17.26■□□□□ 0.35
VPS28-212ENST00000530836 DCUN1D4Q92564 292 aa17.26■□□□□ 0.35
VPS28-212ENST00000530836 SLA2Q9H6Q3 261 aa17.26■□□□□ 0.35
VPS28-212ENST00000530836 BOLA1Q9Y3E2 137 aa17.26■□□□□ 0.35
VPS28-212ENST00000530836 AMMECR1Q9Y4X0 333 aaPredicted RBP17.26■□□□□ 0.35
VPS28-212ENST00000530836 H0YIZ8 118 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 S1PR2O95136 353 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 SCGB1D2O95969 90 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 CXCL2P19875 107 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 RTL8BQ17RB0 113 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 HEXA-AS1Q9H8Q6 139 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 POLR3KQ9Y2Y1 108 aaPredicted RBP17.25■□□□□ 0.35
VPS28-212ENST00000530836 ZANQ9Y493 2812 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 FAM90A9PA6NNJ1 464 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 E5RGE8 158 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 PITX3O75364 302 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 KRASP01116 189 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 PRTN3P24158 256 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 S100A11P31949 105 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 ID3Q02535 119 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 C1orf229Q6ZS94 237 aaPredicted RBP17.25■□□□□ 0.35
VPS28-212ENST00000530836 ZNF383Q8NA42 475 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 OR1S1Q8NH92 325 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 ST6GALNAC6Q969X2 333 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 AIFM2Q9BRQ8 373 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 PCGF1Q9BSM1 259 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 UNKLQ9H9P5 680 aaKnown RBP17.25■□□□□ 0.35
VPS28-212ENST00000530836 NSG2Q9Y328 171 aa17.25■□□□□ 0.35
VPS28-212ENST00000530836 LSM5Q9Y4Y9 91 aaKnown RBP17.25■□□□□ 0.35
VPS28-212ENST00000530836 F8P00451 2351 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 K7EPK0 472 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 IGLV1-47P01700 117 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 CT45A6P0DMU7 189 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 CT45A5P0DMU8 189 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 CT45A7P0DMV0 189 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 NQO2P16083 231 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 PVALBP20472 110 aaPredicted RBP17.24■□□□□ 0.35
VPS28-212ENST00000530836 ZFP36P26651 326 aaKnown RBP17.24■□□□□ 0.35
VPS28-212ENST00000530836 ARF6P62330 175 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 TMEM249Q2WGJ8 235 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 HLA-DRB5Q30154 266 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 FAM71E2Q8N5Q1 922 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 Q8N7P7 452 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 CACFD1Q9UGQ2 172 aa17.24■□□□□ 0.35
VPS28-212ENST00000530836 IGHV2-70DA0A0C4DH43 119 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 A0A0G2JRQ6 117 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 MARCH11A6NNE9 402 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 FAM90A26D6RGX4 464 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 APOA2P02652 100 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 P0C879 139 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 MMP9P14780 707 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 LINC00205P59089 165 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 ERVK-16P61578 105 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 PAX2Q02962 417 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 TMUB2Q71RG4 321 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 H2BFWTQ7Z2G1 175 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 KCNRGQ8N5I3 272 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 OR11H6Q8NGC7 330 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 R3HDM4Q96D70 268 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 OR5AC2Q9NZP5 309 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 CACNG5Q9UF02 275 aa17.23■□□□□ 0.35
VPS28-212ENST00000530836 TXNL1O43396 289 aa17.22■□□□□ 0.35
VPS28-212ENST00000530836 EPHA1P21709 976 aa17.22■□□□□ 0.35
VPS28-212ENST00000530836 G6PCP35575 357 aa17.22■□□□□ 0.35
VPS28-212ENST00000530836 FOXRED2Q8IWF2 684 aa17.22■□□□□ 0.35
VPS28-212ENST00000530836 OR5AN1Q8NGI8 311 aa17.22■□□□□ 0.35
VPS28-212ENST00000530836 AQP10Q96PS8 301 aa17.22■□□□□ 0.35
VPS28-212ENST00000530836 ARL6Q9H0F7 186 aa17.22■□□□□ 0.35
VPS28-212ENST00000530836 BUB1B-PAK6H3BSN5 160 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 HRASP01112 189 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 LCN2P80188 198 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 OPCMLQ14982 345 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 TGIF2LXQ8IUE1 241 aa17.21■□□□□ 0.35
VPS28-212ENST00000530836 C1orf159Q96HA4 380 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms