RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TXNL1O43396 289 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 PRAF2O60831 178 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 PEX14O75381 377 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 IGHV1-69P01742 117 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 RLN1P04808 185 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 ARG1P05089 322 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 PIGPP57054 158 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 TAS2R31P59538 309 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 ZNF816Q0VGE8 651 aaPredicted RBP5.98□□□□□ -1.45
CD44-228ENST00000528455 EIF4EBP1Q13541 118 aaPredicted RBP5.98□□□□□ -1.45
CD44-228ENST00000528455 ABCA11PQ4W5N1 156 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 FBLN7Q53RD9 439 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 GPR157Q5UAW9 335 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 ZNF818PQ6ZRF7 136 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 ZNF833PQ6ZTB9 187 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 SGPP2Q8IWX5 399 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 LYG1Q8N1E2 194 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 DRAM1Q8N682 238 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 OR4P4Q8NGL7 312 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 CD300LFQ8TDQ1 290 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 RTN4IP1Q8WWV3 396 aaPredicted RBP5.98□□□□□ -1.45
CD44-228ENST00000528455 TOMM40LQ969M1 308 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 GALNT14Q96FL9 552 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 BEX2Q9BXY8 128 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 PARP12Q9H0J9 701 aaKnown RBP5.98□□□□□ -1.45
CD44-228ENST00000528455 C20orf85Q9H1P6 137 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 MEGF9Q9H1U4 602 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 OR2D2Q9H210 308 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 IFI27L2Q9H2X8 130 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 SLC2A9Q9NRM0 540 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 NUDT15Q9NV35 164 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 TMEM160Q9NX00 188 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 KCNS2Q9ULS6 477 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 FLVCR2Q9UPI3 526 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 FBN1P35555 2871 aaKnown RBP5.98□□□□□ -1.45
CD44-228ENST00000528455 MXRA5Q9NR99 2828 aa5.98□□□□□ -1.45
CD44-228ENST00000528455 TRAV6A0A075B6T7 132 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 SAA2-SAA4A0A096LPE2 208 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 CRYM-AS1A6NIL9 109 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 SNRPGP15A8MWD9 76 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 HSD17B6O14756 317 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 NPFFO15130 113 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 ARPC1BO15143 372 aaKnown RBP5.97□□□□□ -1.45
CD44-228ENST00000528455 OR4E1P0C645 316 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 SAA2P0DJI9 122 aaPredicted RBP5.97□□□□□ -1.45
CD44-228ENST00000528455 CT45A6P0DMU7 189 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 CT45A5P0DMU8 189 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 CT45A7P0DMV0 189 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 RRASP10301 218 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 SPNP16150 400 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 AKR1C4P17516 323 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 F2RP25116 425 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 DUTP33316 252 aaKnown RBP5.97□□□□□ -1.45
CD44-228ENST00000528455 THBS3P49746 956 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 GNG10P50151 68 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 BAMBIQ13145 260 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 RNF151Q2KHN1 245 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 CCDC144NLQ6NUI1 221 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 Q6ZNX1 250 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 CADM3Q8N126 398 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 OR8H3Q8N146 312 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 ADAD2Q8NCV1 583 aaKnown RBP5.97□□□□□ -1.45
CD44-228ENST00000528455 C20orf173Q96LM9 149 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 AIFM2Q9BRQ8 373 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 FXYD6Q9H0Q3 95 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 GPN1Q9HCN4 374 aaPredicted RBP5.97□□□□□ -1.45
CD44-228ENST00000528455 NUP50Q9UKX7 468 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 PRELID3BQ9Y3B1 194 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 COL6A5A8TX70 2615 aa5.97□□□□□ -1.45
CD44-228ENST00000528455 A0A0B4J2A0 478 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 C3orf85A0A1B0GTC6 90 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 C9orf170A2RU37 121 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 RBFOX2O43251 390 aaKnown RBP eCLIP5.96□□□□□ -1.46
CD44-228ENST00000528455 DUS4LO95620 317 aaKnown RBP5.96□□□□□ -1.46
CD44-228ENST00000528455 CDS2O95674 445 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 FSHBP01225 129 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 FAM157CP0CG43 387 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 ANXA3P12429 323 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 RPA2P15927 270 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 COX7A1P24310 79 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 CD1BP29016 333 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 BRS3P32247 399 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 SAA4P35542 130 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 KIR2DS2P43631 304 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 ARHGDIBP52566 201 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 DLX1P56177 255 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 CATR1Q13166 79 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 HABP2Q14520 560 aaPredicted RBP5.96□□□□□ -1.46
CD44-228ENST00000528455 AANATQ16613 207 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 PHLDA2Q53GA4 152 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 RPL39P5Q59GN2 51 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 KLF17Q5JT82 389 aaPredicted RBP5.96□□□□□ -1.46
CD44-228ENST00000528455 TPTE2P1Q5T6R2 138 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 GLDNQ6ZMI3 551 aaPredicted RBP5.96□□□□□ -1.46
CD44-228ENST00000528455 C9orf139Q6ZV77 190 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 TMED4Q7Z7H5 227 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 TBC1D26Q86UD7 250 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 TGIF2LXQ8IUE1 241 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 GLYATL2Q8WU03 294 aa5.96□□□□□ -1.46
CD44-228ENST00000528455 TMEM230Q96A57 120 aa5.96□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms