RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ABHD12Q8N2K0 398 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 FAM216AQ8WUB2 273 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 RBKSQ9H477 322 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 CTXND1A0A1B0GTU2 59 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 PINLYPA6NC86 204 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 LEMD1Q68G75 181 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 OR10G8Q8NGN5 311 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 OR1B1Q8NGR6 318 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 NDUFAF3Q9BU61 184 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 ZNF581Q9P0T4 197 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 ARL2-SNX15V9GYD0 113 aa9.98□□□□□ -0.81
SYNPO-204ENST00000519664 DANCRP0C864 163 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 AARDQ4LEZ3 155 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 VWA1Q6PCB0 445 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 TRAT1Q6PIZ9 186 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 Q6ZN92 141 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 TAF15Q92804 592 aaKnown RBP eCLIP9.97□□□□□ -0.81
SYNPO-204ENST00000519664 IGKV1D-13A0A0B4J2D9 117 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 IGKV1-13P0DP09 117 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 SAPCD1Q5SSQ6 148 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 DMRTA1Q5VZB9 504 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 H1FOOQ8IZA3 346 aaPredicted RBP9.97□□□□□ -0.81
SYNPO-204ENST00000519664 SGMS2Q8NHU3 365 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 CBLN4Q9NTU7 201 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 TIMM9Q9Y5J7 89 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 HSPB1P04792 205 aaKnown RBP9.97□□□□□ -0.81
SYNPO-204ENST00000519664 LYZP61626 148 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 MIC13Q5XKP0 118 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 MARS2Q96GW9 593 aaKnown RBP9.97□□□□□ -0.81
SYNPO-204ENST00000519664 C16orf97H3BN30 126 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 AMTP48728 403 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 TGIF2LYQ8IUE0 185 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 TBX15Q96SF7 602 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 ZDHHC8Q9ULC8 765 aa9.97□□□□□ -0.81
SYNPO-204ENST00000519664 TGIF2-C20orf24A0A0A6YYL0 155 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 IGKV1-12A0A0C4DH73 117 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 ODAMA1E959 279 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 IGKV1D-12P01611 117 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 MEF2BQ02080 365 aaPredicted RBP9.96□□□□□ -0.81
SYNPO-204ENST00000519664 ZIC4Q8N9L1 334 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 OR8G5Q8NG78 346 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 TM2D1Q9BX74 207 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 MGST3O14880 152 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 CSN3P07498 182 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 WFIKKN1Q96NZ8 548 aa9.96□□□□□ -0.81
SYNPO-204ENST00000519664 REPIN1Q9BWE0 567 aaKnown RBP9.96□□□□□ -0.81
SYNPO-204ENST00000519664 TMEM210A6NLX4 147 aa9.96□□□□□ -0.82
SYNPO-204ENST00000519664 MARCH11A6NNE9 402 aa9.96□□□□□ -0.82
SYNPO-204ENST00000519664 SERF2P84101 59 aa9.96□□□□□ -0.82
SYNPO-204ENST00000519664 TEPPQ6URK8 271 aa9.96□□□□□ -0.82
SYNPO-204ENST00000519664 C16orf82Q7Z2V1 217 aa9.96□□□□□ -0.82
SYNPO-204ENST00000519664 C17orf82Q86X59 251 aaPredicted RBP9.96□□□□□ -0.82
SYNPO-204ENST00000519664 OR5P3Q8WZ94 311 aa9.96□□□□□ -0.82
SYNPO-204ENST00000519664 FREM1Q5H8C1 2179 aa9.96□□□□□ -0.82
SYNPO-204ENST00000519664 COLCA2A8K830 154 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 CYB5R3P00387 301 aaPredicted RBP9.95□□□□□ -0.82
SYNPO-204ENST00000519664 IER3P46695 156 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 KCNMB1Q16558 191 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 RNASEKQ6P5S7 137 aaKnown RBP9.95□□□□□ -0.82
SYNPO-204ENST00000519664 ZNF738Q8NE65 137 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 OR1P1Q8NH06 330 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 OR2T6Q8NHC8 308 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 FLYWCH2Q96CP2 140 aaKnown RBP9.95□□□□□ -0.82
SYNPO-204ENST00000519664 NUDT16L1Q9BRJ7 211 aaKnown RBP9.95□□□□□ -0.82
SYNPO-204ENST00000519664 ZNF253O75346 499 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 CRISP2P16562 243 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 TNFRSF9Q07011 255 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 SLC25A53Q5H9E4 307 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 ZDHHC16Q969W1 377 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 WBP1Q96G27 269 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 SGK494Q96LW2 274 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 PCGF1Q9BSM1 259 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 PAM16Q9Y3D7 125 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 C9orf172C9J069 976 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 TRGC1P0CF51 173 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 HCP5Q6MZN7 132 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 BIVMQ86UB2 503 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 CSPG4Q6UVK1 2322 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 LOC102723971A0A1B0GUV8 181 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 PRR33A8MZF0 331 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 PGA5P0DJD9 388 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 PSG7Q13046 419 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 Q56UQ5 140 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 LINC00596Q86U02 117 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 OR4X1Q8NH49 305 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 SLC25A10Q9UBX3 287 aaPredicted RBP9.95□□□□□ -0.82
SYNPO-204ENST00000519664 INSIG2Q9Y5U4 225 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 PXMP4Q9Y6I8 212 aa9.95□□□□□ -0.82
SYNPO-204ENST00000519664 GABRA6Q16445 453 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 ZBTB34Q8NCN2 500 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 BCL2L2Q92843 193 aaPredicted RBP9.94□□□□□ -0.82
SYNPO-204ENST00000519664 LPAR2Q9HBW0 351 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 MANBALQ9NQG1 85 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 NAGKQ9UJ70 344 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 A0A1W2PN81 502 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 HELTA6NFD8 242 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 C12orf77C9JDV5 145 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 CD3EP07766 207 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 KHDC1LQ5JSQ8 128 aa9.94□□□□□ -0.82
SYNPO-204ENST00000519664 DPPA3Q6W0C5 159 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms