RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 DDA1Q9BW61 102 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 TM2D1Q9BX74 207 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 YTHDF2Q9Y5A9 579 aaKnown RBP10.82□□□□□ -0.68
USP53-209ENST00000514665 SPG11Q96JI7 2443 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 IGKV3-7A0A075B6H7 116 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 GALNT14Q96FL9 552 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 WFIKKN1Q96NZ8 548 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 RNF2Q99496 336 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 TBX15Q96SF7 602 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 RASL11BQ9BPW5 248 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 RAB1BQ9H0U4 201 aa10.82□□□□□ -0.68
USP53-209ENST00000514665 PLCE1Q9P212 2302 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 CBY3A6NI87 242 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 COX5BP10606 129 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 KCNMB1Q16558 191 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 SAXO1Q8IYX7 474 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 ZNRF1Q8ND25 227 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 TMEM140Q9NV12 185 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 CALYQ9NYX4 217 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 NAGKQ9UJ70 344 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 SCN8AQ9UQD0 1980 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 FAM87AP0C7U9 286 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 LINC00869P0C866 280 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 STPG1Q5TH74 334 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 TCAPO15273 167 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 EFNA2O43921 213 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 ZNF735P0CB33 412 aa10.81□□□□□ -0.68
USP53-209ENST00000514665 MRPL14Q6P1L8 145 aaKnown RBP10.81□□□□□ -0.68
USP53-209ENST00000514665 IGKV1D-8A0A087WSZ0 117 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 TRBV23-1A0A0A0MS06 115 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 LNP1A1A4G5 178 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 ELOBQ15370 118 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 OR4C5Q8NGB2 326 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 OR5P3Q8WZ94 311 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 RCC1LQ96I51 464 aaKnown RBP10.8□□□□□ -0.68
USP53-209ENST00000514665 AMMECR1Q9Y4X0 333 aaPredicted RBP10.8□□□□□ -0.68
USP53-209ENST00000514665 UMODP07911 640 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 C5orf17Q8NAS9 161 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 PAXXQ9BUH6 204 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 IGLV3-12A0A075B6K2 115 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 ACP1P24666 158 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 PERPQ96FX8 193 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 PARLQ9H300 379 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 LPAR2Q9HBW0 351 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 COA4Q9NYJ1 87 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 TCF19Q9Y242 345 aa10.8□□□□□ -0.68
USP53-209ENST00000514665 AHRRA9YTQ3 701 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 MPDU1O75352 247 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 BIVMQ86UB2 503 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 SGK494Q96LW2 274 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 HSPB9Q9BQS6 159 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 ZNF703Q9H7S9 590 aaPredicted RBP10.79□□□□□ -0.68
USP53-209ENST00000514665 HEXA-AS1Q9H8Q6 139 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 CEACAM18A8MTB9 384 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 J3KRW8 73 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 TRGC1P0CF51 173 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 UCP1P25874 307 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 PKIAP61925 76 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 SRSF3P84103 164 aaKnown RBP10.79□□□□□ -0.68
USP53-209ENST00000514665 KIAA1644Q3SXP7 199 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 SIP14410 1827 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 LOC105371267A0A1B0GV96 52 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 C12orf77C9JDV5 145 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 COX19Q49B96 90 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 FADS6Q8N9I5 356 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 FDCSPQ8NFU4 85 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 ZNF596Q8TC21 504 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 DCTN5Q9BTE1 182 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 REPIN1Q9BWE0 567 aaKnown RBP10.79□□□□□ -0.68
USP53-209ENST00000514665 RSPO3Q9BXY4 272 aaPredicted RBP10.79□□□□□ -0.68
USP53-209ENST00000514665 ZFHX2Q9C0A1 2572 aaPredicted RBP10.79□□□□□ -0.68
USP53-209ENST00000514665 FAM90A26D6RGX4 464 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 CD82P27701 267 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 RPL27AP46776 148 aaKnown RBP10.79□□□□□ -0.68
USP53-209ENST00000514665 HSPE1P61604 102 aaKnown RBP10.79□□□□□ -0.68
USP53-209ENST00000514665 OR8B3Q8NGG8 313 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 ZNF714Q96N38 554 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 OR8B2Q96RD0 313 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 GOLT1BQ9Y3E0 138 aa10.79□□□□□ -0.68
USP53-209ENST00000514665 DNASE2O00115 360 aaPredicted RBP10.78□□□□□ -0.68
USP53-209ENST00000514665 SLC25A17O43808 307 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 SMPD2O60906 423 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 ORM1P02763 201 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 SMIM17P0DL12 118 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 HIST1H1BP16401 226 aaKnown RBP10.78□□□□□ -0.68
USP53-209ENST00000514665 LYZL4Q96KX0 146 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 LRRK1Q38SD2 2015 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 MGAMO43451 1857 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 A0A0A6YYD4 124 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 ARL14EPLP0DKL9 152 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 HIST1H1EP10412 219 aaKnown RBP10.78□□□□□ -0.68
USP53-209ENST00000514665 RPL8P62917 257 aaKnown RBP10.78□□□□□ -0.68
USP53-209ENST00000514665 FXYD3Q14802 87 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 FAM209BQ5JX69 171 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 ZNF385CQ66K41 422 aaPredicted RBP10.78□□□□□ -0.68
USP53-209ENST00000514665 NHLRC2Q8NBF2 726 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 STXBP6Q8NFX7 210 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 LSM10Q969L4 123 aaKnown RBP10.78□□□□□ -0.68
USP53-209ENST00000514665 ZDHHC16Q969W1 377 aa10.78□□□□□ -0.68
USP53-209ENST00000514665 SMIM8Q96KF7 97 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms