RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TIMM9Q9Y5J7 89 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 HOXA6P31267 233 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 MRPL49Q13405 166 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 ATP6V1FQ16864 119 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 COQ2Q96H96 371 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 AGMATQ9BSE5 352 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 LOC400499M0QZD8 3231 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 ZNF320A2RRD8 509 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 CENPVQ7Z7K6 275 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 VKORC1L1Q8N0U8 176 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 DVL1O14640 695 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 MBP02144 154 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 C1QTNF9P0C862 333 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 OR13A1Q8NGR1 328 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 QTRT1Q9BXR0 403 aaKnown RBP7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 SPRR3Q9UBC9 169 aa7.74□□□□□ -1.17
LIMCH1-215ENST00000512632 WISP2O76076 250 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 KLF14Q8TD94 323 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 TRGV5A0A0B4J1U4 118 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 A0A1W2PPV4 95 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 KLRC4-KLRK1H3BQV0 150 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 MLNRO43193 412 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 TDGF1P13385 188 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 ACP1P24666 158 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 GNB1P62873 340 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 ZNF114Q8NC26 417 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 PARD6GQ9BYG4 376 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 OR6C3Q9NZP0 311 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 CEP250Q9BV73 2442 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 FCGR3BO75015 233 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 IGHV1-2P23083 117 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM164Q5U3C3 297 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 TGIF2LYQ8IUE0 185 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 CNEP1R1Q8N9A8 125 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM170AQ8WVE7 144 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 SPRY4Q9C004 299 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 MANBALQ9NQG1 85 aa7.73□□□□□ -1.17
LIMCH1-215ENST00000512632 MARCH11A6NNE9 402 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 P0C879 139 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 CD33P20138 364 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 IL3RAP26951 378 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 UBALD2Q8IYN6 164 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 ARRDC1-AS1Q9H2J1 176 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 KLF13Q9Y2Y9 288 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 ROS1P08922 2347 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 OOEPA6NGQ2 149 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 CLDN14O95500 239 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 OR9G9P0C7N8 305 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 ACOT6Q3I5F7 207 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 ZNF766Q5HY98 468 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM256Q8N2U0 113 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 OR5R1Q8NH85 324 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 HEYLQ9NQ87 328 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 C15orf62A8K5M9 175 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 RAB29O14966 203 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 CD1BP29016 333 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 FOXF2Q12947 444 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 C11orf53Q8IXP5 236 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 ZBTB34Q8NCN2 500 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 R3HDM4Q96D70 268 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 ANAPC16Q96DE5 110 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 A8MWP6 167 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 OR4A8P0C604 315 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 TGFBR3Q03167 851 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 TCF23Q7RTU1 214 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 LINC01551Q86U37 167 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 C1orf210Q8IVY1 113 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 ABHD12Q8N2K0 398 aa7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 CIB3Q96Q77 187 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-215ENST00000512632 EP300Q09472 2414 aaPredicted RBP7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 C17orf112F2Z3M2 114 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 CD82P27701 267 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 THBS3P49746 956 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 SGMS2Q8NHU3 365 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 TMEM18Q96B42 140 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 ZPBPQ9BS86 351 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 HEATR1Q9H583 2144 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 GNG12Q9UBI6 72 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 CACNA1GO43497 2377 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 RRHO14718 337 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 GGCTO75223 188 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 PROP1O75360 226 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 PRAMEF5Q5TYX0 476 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 MIC13Q5XKP0 118 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 SLC35E4Q6ICL7 350 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 SSMEM1Q8WWF3 244 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 TRAPPC1Q9Y5R8 145 aa7.71□□□□□ -1.17
LIMCH1-215ENST00000512632 TIMM8AO60220 97 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 NUPR1O60356 82 aa7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 SCGB1D1O95968 90 aa7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 CD46P15529 392 aa7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 CNN1P51911 297 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 COA6Q5JTJ3 125 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 KCNIP4Q6PIL6 250 aa7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 DHRS13Q6UX07 377 aa7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 RNASEH2CQ8TDP1 164 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 CDX2Q99626 313 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 MRPL37Q9BZE1 423 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 CNOT1A5YKK6 2376 aaKnown RBP7.71□□□□□ -1.18
LIMCH1-215ENST00000512632 AQP7O14520 342 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms