RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 INSIG2Q9Y5U4 225 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 LRRK1Q38SD2 2015 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 KIAA1549LQ6ZVL6 1849 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 SERTM2A0A1B0GWG4 89 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 OR4A8P0C604 315 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 CRISP2P16562 243 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 PMCHP20382 165 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF497Q6ZNH5 498 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 OR4D5Q8NGN0 318 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 NOL4LQ96MY1 436 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 CEP290O15078 2479 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 MC5RP33032 325 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 RAB24Q969Q5 203 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 REG4Q9BYZ8 158 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 PARD6AQ9NPB6 346 aa9.12□□□□□ -0.95
LIMCH1-205ENST00000503057 IGKV1D-13A0A0B4J2D9 117 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 CDX4O14627 284 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 SPINK4O60575 86 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 IGKV1-13P0DP09 117 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 GLRXP35754 106 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ATRAIDQ6UW56 229 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ARID1AO14497 2285 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 IGHV2OR16-5A0A0B4J2B6 119 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 OR5I1Q13606 314 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 PLPPR1Q8TBJ4 325 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 AUP1Q9Y679 476 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 TRAV24A0A0B4J272 114 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 CELA3BP08861 270 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ARL16Q0P5N6 197 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF146Q15072 292 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 LINC00518Q8N0U6 118 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 QTRT1Q9BXR0 403 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 CYTL1Q9NRR1 136 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ELOVL5Q9NYP7 299 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 KIF26AQ9ULI4 1882 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ALPK2Q86TB3 2170 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 DLL1O00548 723 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 TMEM183BQ1AE95 376 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 MEGF10Q96KG7 1140 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ASCL3Q9NQ33 180 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 WASHC3Q9Y3C0 194 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 TGIF2-C20orf24A0A0A6YYL0 155 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 NDUFB4O95168 129 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 TRGC2P03986 189 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 DNM1P46Q6ZS02 220 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 MIOXQ9UGB7 285 aa9.11□□□□□ -0.95
LIMCH1-205ENST00000503057 C5orf63A6NC05 138 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 PROB1E7EW31 1015 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 NDUFA2O43678 99 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 CD59P13987 128 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 REG1BP48304 166 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF324BQ6AW86 544 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF524Q96C55 264 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 BARX1Q9HBU1 254 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 TCF19Q9Y242 345 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 USF1P22415 310 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 RPL8P62917 257 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 MIC13Q5XKP0 118 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 RNF144BQ7Z419 303 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 RCC1LQ96I51 464 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 GGACTQ9BVM4 153 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 RPRMQ9NS64 109 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 ATP5IP56385 69 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 ACSF3Q4G176 576 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 SPRR3Q9UBC9 169 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 TP53BP1Q12888 1972 aaPredicted RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 KBTBD11O94819 623 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 SRP19P09132 144 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 LYL1P12980 280 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 OR10J1P30954 320 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 UCNP55089 124 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 RPL11P62913 178 aaKnown RBP9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 RASL11BQ9BPW5 248 aa9.1□□□□□ -0.95
LIMCH1-205ENST00000503057 CEACAM18A8MTB9 384 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 TMEM250H0YL14 139 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 SRSF3P84103 164 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF383Q8NA42 475 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 NPCDR1Q9BY65 106 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF785A8K8V0 405 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 WNT5AP41221 380 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 SSTP61278 116 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 HLA-DRB5Q30154 266 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 OR13A1Q8NGR1 328 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 CLDND2Q8NHS1 167 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 PAXXQ9BUH6 204 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 A0A087WWC5 75 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 ID3Q02535 119 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 RNASEKQ6P5S7 137 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 SPNS3Q6ZMD2 512 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF525Q8N782 197 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 C9orf106Q8NAJ2 232 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 SGMS2Q8NHU3 365 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 ZNF596Q8TC21 504 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 PRO1933Q9H354 126 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 TUBA4BQ9H853 241 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 LY6G6EA0A0G2JKS1 128 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 SELENOTP62341 195 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 ASCL4Q6XD76 172 aa9.09□□□□□ -0.95
LIMCH1-205ENST00000503057 PQLC2Q6ZP29 291 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms