RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ITLN1Q8WWA0 313 aa9.96□□□□□ -0.81
NUP54-202ENST00000502850 HIST1H2BAQ96A08 127 aa9.96□□□□□ -0.81
NUP54-202ENST00000502850 SDSLQ96GA7 329 aa9.96□□□□□ -0.81
NUP54-202ENST00000502850 ADTRPQ96IZ2 230 aa9.96□□□□□ -0.81
NUP54-202ENST00000502850 SIRT7Q9NRC8 400 aa9.96□□□□□ -0.81
NUP54-202ENST00000502850 CALYQ9NYX4 217 aa9.96□□□□□ -0.81
NUP54-202ENST00000502850 PUS1Q9Y606 427 aaKnown RBP eCLIP9.96□□□□□ -0.81
NUP54-202ENST00000502850 ATMQ13315 3056 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 TRGV10A0A0A0MS01 117 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 IGHV3-43A0A0B4J1X8 118 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 H3BQ15 152 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 IGHV3-43DP0DP04 118 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 MAS1LP35410 378 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 GNB2P62879 340 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 TNFAIP6P98066 277 aaPredicted RBP9.96□□□□□ -0.82
NUP54-202ENST00000502850 VWC2Q2TAL6 325 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 TMEM108Q6UXF1 575 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 ZNF429Q86V71 674 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 RFESDQ8TAC1 157 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 MALSU1Q96EH3 234 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 RCC1LQ96I51 464 aaKnown RBP9.96□□□□□ -0.82
NUP54-202ENST00000502850 ESRP2Q9H6T0 727 aaKnown RBP9.96□□□□□ -0.82
NUP54-202ENST00000502850 GNG13Q9P2W3 67 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 RFNGQ9Y644 331 aa9.96□□□□□ -0.82
NUP54-202ENST00000502850 MAP1LC3B2A6NCE7 125 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 LINC00473A8K010 186 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 NQO2P16083 231 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 CD40P25942 277 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 EDDM3BP56851 147 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 SPCS3P61009 180 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 MSMPQ1L6U9 139 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 PDLIM3Q53GG5 364 aaPredicted RBP9.95□□□□□ -0.82
NUP54-202ENST00000502850 PRAMEF5Q5TYX0 476 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 VHLLQ6RSH7 139 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 CYB561D1Q8N8Q1 229 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 OR4A16Q8NH70 328 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 OR4S2Q8NH73 311 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 S1PR3Q99500 378 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 ZNF251Q9BRH9 671 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 C20orf24Q9BUV8 137 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 GGACTQ9BVM4 153 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 MAP1LC3BQ9GZQ8 125 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 CLN8Q9UBY8 286 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 VAX2Q9UIW0 290 aa9.95□□□□□ -0.82
NUP54-202ENST00000502850 CTXND1A0A1B0GTU2 59 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 M0R1X1 148 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 FCGR3BO75015 233 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 MPDU1O75352 247 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 OR2C1O95371 312 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 PLA2G2AP14555 144 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 TNFRSF1AP19438 455 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 RAB5AP20339 215 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 FGF7P21781 194 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 THBS3P49746 956 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 BRWD1-AS2P59051 145 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 STUMQ69YW2 141 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 ALKBH2Q6NS38 261 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 ACTR3CQ9C0K3 210 aaPredicted RBP9.94□□□□□ -0.82
NUP54-202ENST00000502850 ZNF665Q9H7R5 613 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 MANBALQ9NQG1 85 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 KCNIP2Q9NS61 270 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 SLC39A9Q9NUM3 307 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 GFOD1Q9NXC2 390 aa9.94□□□□□ -0.82
NUP54-202ENST00000502850 IGHV3OR15-7A0A075B7D8 119 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 KBTBD11-OT1A0A1B0GTJ5 212 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 A0A1W2PPH5 198 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 NKX6-3A6NJ46 265 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 ZNF729A6NN14 1252 aaPredicted RBP9.93□□□□□ -0.82
NUP54-202ENST00000502850 PMS2P5A8MQ11 134 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 VSTM5A8MXK1 200 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 DEFB108AA8MXU0 73 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 ZG16O60844 167 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 IFNA17P01571 189 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 TFF1P04155 84 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 S100A6P06703 90 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 AKR1C3P42330 323 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 LOXL3P58215 753 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 LTC4SQ16873 150 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 LCN15Q6UWW0 184 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 ETV3LQ6ZN32 361 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 RPRMLQ8N4K4 120 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 RAB39BQ96DA2 213 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 IFI27L2Q9H2X8 130 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 GCM1Q9NP62 436 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 KALRNO60229 2985 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 TANC2Q9HCD6 1990 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 ZFP92A6NM28 416 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 C16orf97H3BN30 126 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 IGHV1-46P01743 117 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 CD55P08174 381 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 CGB3P0DN86 165 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 CGB7P0DN87 165 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 AGAP20933 346 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 BMP5P22003 454 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 CEBPGP53567 150 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 ELLP55199 621 aaPredicted RBP9.93□□□□□ -0.82
NUP54-202ENST00000502850 TBR1Q16650 682 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 TEX36Q5VZQ5 186 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 NCR3LG1Q68D85 454 aa9.93□□□□□ -0.82
NUP54-202ENST00000502850 C1QL4Q86Z23 238 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms