RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 MOB4Q9Y3A3 225 aa9.5□□□□□ -0.89
CUX1-210ENST00000497815 RNF212BA8MTL3 300 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 SHOXO15266 292 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 RAMP3O60896 148 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 CTSDP07339 412 aaPredicted RBP9.49□□□□□ -0.89
CUX1-210ENST00000497815 RRASP10301 218 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 TAGLNQ01995 201 aaKnown RBP9.49□□□□□ -0.89
CUX1-210ENST00000497815 SURF2Q15527 256 aaPredicted RBP9.49□□□□□ -0.89
CUX1-210ENST00000497815 C9orf152Q5JTZ5 239 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 TMED4Q7Z7H5 227 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 SPAG16Q8N0X2 631 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.49□□□□□ -0.89
CUX1-210ENST00000497815 POC5Q8NA72 575 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 OR4S2Q8NH73 311 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 ZNF486Q96H40 463 aaPredicted RBP9.49□□□□□ -0.89
CUX1-210ENST00000497815 HARBI1Q96MB7 349 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 RTBDNQ9BSG5 229 aaPredicted RBP9.49□□□□□ -0.89
CUX1-210ENST00000497815 C5orf66Q9H5L9 145 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 GPR132Q9UNW8 380 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 NF1P21359 2839 aa9.49□□□□□ -0.89
CUX1-210ENST00000497815 NIPBLQ6KC79 2804 aaeCLIP9.48□□□□□ -0.893e-10■■■■■ 76.4
CUX1-210ENST00000497815 MPPED1O15442 326 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 NBR2O15453 112 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 AKR1C4P17516 323 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 BTCP35070 178 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 BRWD1-AS2P59051 145 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 BLCAPP62952 87 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 PLGLAQ15195 96 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 RBMS2Q15434 407 aaKnown RBP9.48□□□□□ -0.89
CUX1-210ENST00000497815 C16orf82Q7Z2V1 217 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 CCDC71LQ8N9Z2 235 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 ADAD2Q8NCV1 583 aaKnown RBP9.48□□□□□ -0.89
CUX1-210ENST00000497815 OR4C13Q8NGP0 309 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 SCGB3A2Q96PL1 93 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 NPFFR1Q9GZQ6 430 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 PLSCR3Q9NRY6 295 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 LIN7CQ9NUP9 197 aaKnown RBP9.48□□□□□ -0.89
CUX1-210ENST00000497815 C1RLQ9NZP8 487 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 KIAA1456Q9P272 454 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 TBC1D24Q9ULP9 559 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 ZFHX3Q15911 3703 aa9.48□□□□□ -0.89
CUX1-210ENST00000497815 TEX13DA0A0J9YY54 714 aaPredicted RBP9.47□□□□□ -0.89
CUX1-210ENST00000497815 SLC25A17O43808 307 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 NDUFB6O95139 128 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 AMY1AP04745 511 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 F2RP25116 425 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 KIR2DS2P43631 304 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 LPAR6P43657 344 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 RIPPLY3P57055 190 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 RND3P61587 244 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 RELBQ01201 579 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 ASAH1Q13510 395 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 PSG5Q15238 335 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 KRTAP24-1Q3LI83 254 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 SP6Q3SY56 376 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 TMEM177Q53S58 311 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 ARSJQ5FYB0 599 aaPredicted RBP9.47□□□□□ -0.89
CUX1-210ENST00000497815 MZT2BQ6NZ67 158 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 C11orf88Q6PI97 169 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 Q6ZS46 218 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 VKORC1L1Q8N0U8 176 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 C5orf56Q8N8D9 126 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 Q8N9W7 124 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 OR8H1Q8NGG4 311 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 ZFAND2BQ8WV99 257 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 TSNAXQ99598 290 aaKnown RBP9.47□□□□□ -0.89
CUX1-210ENST00000497815 RASL11BQ9BPW5 248 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 SLC25A21Q9BQT8 299 aaPredicted RBP9.47□□□□□ -0.89
CUX1-210ENST00000497815 FBXL15Q9H469 300 aa9.47□□□□□ -0.89
CUX1-210ENST00000497815 METTL1Q9UBP6 276 aaKnown RBP9.47□□□□□ -0.89
CUX1-210ENST00000497815 C3orf85A0A1B0GTC6 90 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 SRRM4A7MD48 611 aaKnown RBP9.46□□□□□ -0.9
CUX1-210ENST00000497815 M0QZK8 103 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 RRHO14718 337 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 FGF16O43320 207 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 S1PR2O95136 353 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 VSIG10L2P0DP72 767 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 RPA2P15927 270 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 RAG2P55895 527 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 Q6ZSV7 163 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 SSX9Q7RTT3 188 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 NPBQ8NG41 125 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 OSR1Q8TAX0 266 aaPredicted RBP9.46□□□□□ -0.9
CUX1-210ENST00000497815 TMEM230Q96A57 120 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 TP53RKQ96S44 253 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 CLCC1Q96S66 551 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 RNF5Q99942 180 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 NAA60Q9H7X0 242 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 FLVCR2Q9UPI3 526 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 SIGLEC9Q9Y336 463 aa9.46□□□□□ -0.9
CUX1-210ENST00000497815 FAM240BA0A1B0GVZ2 78 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 CRYM-AS1A6NIL9 109 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 ARPC1BO15143 372 aaKnown RBP9.45□□□□□ -0.9
CUX1-210ENST00000497815 RBFOX2O43251 390 aaKnown RBP eCLIP9.45□□□□□ -0.96e-7■■■□□ 18.3
CUX1-210ENST00000497815 NDUFA3O95167 84 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 HPRT1P00492 218 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 IGLV2-23P01705 113 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 OR5AC1P0C628 307 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 LGALS7P47929 136 aa9.45□□□□□ -0.9
CUX1-210ENST00000497815 DEFA1P59665 94 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms