RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 MAGT1Q9H0U3 335 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 PLSCR3Q9NRY6 295 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 BOLA1Q9Y3E2 137 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 U3KQ87 197 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 MARCH11A6NNE9 402 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 LINC00587B1AMM8 73 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 PITX3O75364 302 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 CNIH1O95406 144 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 IAPPP10997 89 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 SUPT4H1P63272 117 aaKnown RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 CR1LQ2VPA4 569 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 PDLIM3Q53GG5 364 aaPredicted RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 LDLRAD3Q86YD5 345 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 SMIM8Q96KF7 97 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 OR10C1Q96KK4 312 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 RNF5Q99942 180 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 TMEM147Q9BVK8 224 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 MS4A7Q9GZW8 240 aaPredicted RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 UNKLQ9H9P5 680 aaKnown RBP6.93□□□□□ -1.3
USP54-215ENST00000497106 C19orf12Q9NSK7 152 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 PRR13Q9NZ81 148 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 DPM3Q9P2X0 92 aa6.93□□□□□ -1.3
USP54-215ENST00000497106 IGKV1-6A0A0C4DH72 117 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 C15orf65H3BRN8 121 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 IGHV1-8P0DP01 117 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 DUTP33316 252 aaKnown RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 SLC25A48Q6ZT89 311 aaKnown RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 COMMD7Q86VX2 200 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 MMD2Q8IY49 270 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 TSPAN15O95858 294 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 PCP4P48539 62 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 CLINT1Q14677 625 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 ARSJQ5FYB0 599 aaPredicted RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 MINOS1Q5TGZ0 78 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 ATP5SQ99766 215 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 LYRM2Q9NU23 88 aaPredicted RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 MINOS1-NBL1R4GNA1 71 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 ZGRF1Q86YA3 2104 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 CHST1O43916 411 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 AKR1C1Q04828 323 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 LGALSLQ3ZCW2 172 aaPredicted RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 SAA2-SAA4A0A096LPE2 208 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 MEX3AA1L020 520 aaKnown RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 ZNF705EA8MWA4 302 aaPredicted RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 NDUFS6O75380 124 aaKnown RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 S1PR2O95136 353 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 SAA2P0DJI9 122 aaPredicted RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 BTN1A1Q13410 526 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 TMEM217Q8N7C4 229 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 BEND2Q8NDZ0 799 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 TMEM140Q9NV12 185 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 UQCC1Q9NVA1 299 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 BEX4Q9NWD9 120 aaPredicted RBP6.92□□□□□ -1.3
USP54-215ENST00000497106 AUP1Q9Y679 476 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 FREM1Q5H8C1 2179 aa6.92□□□□□ -1.3
USP54-215ENST00000497106 FAM106CPP0CH98 169 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 MAS1LP35410 378 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 EWSR1Q01844 656 aaKnown RBP eCLIP6.91□□□□□ -1.3
USP54-215ENST00000497106 SLC38A11Q08AI6 406 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 CLLU1Q5K131 121 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 C1orf122Q6ZSJ8 110 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 COMMD1Q8N668 190 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 RHOVQ96L33 236 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 A0A1W2PPE3 182 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 CCL3L1P16619 93 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 PPT1P50897 306 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 RAB4BP61018 213 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 HSPE1P61604 102 aaKnown RBP6.91□□□□□ -1.3
USP54-215ENST00000497106 TNFRSF9Q07011 255 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 ZNF616Q08AN1 781 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 OR8G2PQ6IF36 304 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 ALKAL2Q6UX46 152 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 ZNF843Q8N446 348 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 PNKDQ8N490 385 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 OR5B3Q8NH48 314 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 FBXL17Q9UF56 701 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 RNF24Q9Y225 148 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 ESPL1Q14674 2120 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 TOX4O94842 621 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 NXPH3O95157 252 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 LOXP28300 417 aaPredicted RBP6.91□□□□□ -1.3
USP54-215ENST00000497106 ARF6P62330 175 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 EXOSC2Q13868 293 aaKnown RBP6.91□□□□□ -1.3
USP54-215ENST00000497106 ZNF273Q14593 569 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 AANATQ16613 207 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 C17orf58Q2M2W7 97 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 OR52E5Q8NH55 327 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 OR51B2Q9Y5P1 312 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 LYNX1G3V0Z9 82 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 IGHV3-7P01780 117 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 DANCRP0C864 163 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 LYNX1P0DP58 116 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 GATA3P23771 443 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 TAGLN2P37802 199 aaKnown RBP6.91□□□□□ -1.3
USP54-215ENST00000497106 MST1LQ2TV78 715 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 OR2G3Q8NGZ4 309 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 NANPQ8TBE9 248 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 HEATR1Q9H583 2144 aaKnown RBP6.91□□□□□ -1.3
USP54-215ENST00000497106 BIN3Q9NQY0 253 aa6.91□□□□□ -1.3
USP54-215ENST00000497106 TBL2Q9Y4P3 447 aaKnown RBP6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms