RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 RPS16P62249 146 aaKnown RBP11.64□□□□□ -0.55
BRCA1-223ENST00000494123 RBMS2Q15434 407 aaKnown RBP11.64□□□□□ -0.55
BRCA1-223ENST00000494123 MMDQ15546 238 aa11.64□□□□□ -0.55
BRCA1-223ENST00000494123 TBC1D26Q86UD7 250 aa11.64□□□□□ -0.55
BRCA1-223ENST00000494123 OR8H1Q8NGG4 311 aa11.64□□□□□ -0.55
BRCA1-223ENST00000494123 OR4C13Q8NGP0 309 aa11.64□□□□□ -0.55
BRCA1-223ENST00000494123 OR4S2Q8NH73 311 aa11.64□□□□□ -0.55
BRCA1-223ENST00000494123 ZFAND2BQ8WV99 257 aa11.64□□□□□ -0.55
BRCA1-223ENST00000494123 SLC25A21Q9BQT8 299 aaPredicted RBP11.64□□□□□ -0.55
BRCA1-223ENST00000494123 LIN7CQ9NUP9 197 aaKnown RBP11.64□□□□□ -0.55
BRCA1-223ENST00000494123 GPR132Q9UNW8 380 aa11.64□□□□□ -0.55
BRCA1-223ENST00000494123 M0QZK8 103 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 SHOXO15266 292 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 PLA2G10O15496 165 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 MZT2BQ6NZ67 158 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 SPAG16Q8N0X2 631 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 Q8N6K4 173 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 RNF5Q99942 180 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 NPFFR1Q9GZQ6 430 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 KIAA1456Q9P272 454 aa11.63□□□□□ -0.55
BRCA1-223ENST00000494123 NBR2O15453 112 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 RIPPLY3P57055 190 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 RND3P61587 244 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 TMEM177Q53S58 311 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 CD300LFQ8TDQ1 290 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 RITA1Q96K30 269 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 HARBI1Q96MB7 349 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 TSNAXQ99598 290 aaKnown RBP11.62□□□□□ -0.55
BRCA1-223ENST00000494123 C5orf66Q9H5L9 145 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 VSIG4Q9Y279 399 aa11.62□□□□□ -0.55
BRCA1-223ENST00000494123 TEX13DA0A0J9YY54 714 aaPredicted RBP11.61□□□□□ -0.55
BRCA1-223ENST00000494123 MPPED1O15442 326 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 FGF16O43320 207 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 F2RP25116 425 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 CNTFRP26992 372 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 LGALS7P47929 136 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 F2RL1P55085 397 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 DEFA1P59665 94 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 DEFA3P59666 94 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 ASAH1Q13510 395 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 PLGLAQ15195 96 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 TMED4Q7Z7H5 227 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 TCTEX1D1Q8N7M0 179 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 OSR1Q8TAX0 266 aaPredicted RBP11.61□□□□□ -0.55
BRCA1-223ENST00000494123 RASL11BQ9BPW5 248 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 RTBDNQ9BSG5 229 aaPredicted RBP11.61□□□□□ -0.55
BRCA1-223ENST00000494123 TBC1D24Q9ULP9 559 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 C2CD3Q4AC94 2353 aa11.61□□□□□ -0.55
BRCA1-223ENST00000494123 RBFOX2O43251 390 aaKnown RBP eCLIP11.6□□□□□ -0.55
BRCA1-223ENST00000494123 RAMP3O60896 148 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 NDUFB6O95139 128 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 BTCP35070 178 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 IFITM3Q01628 133 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 C3orf85A0A1B0GTC6 90 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 SPDEFO95238 335 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 HPRT1P00492 218 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 AKR1C4P17516 323 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 VMA21Q3ZAQ7 101 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 ARSJQ5FYB0 599 aaPredicted RBP11.6□□□□□ -0.55
BRCA1-223ENST00000494123 C9orf152Q5JTZ5 239 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 C11orf88Q6PI97 169 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 SGPP2Q8IWX5 399 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 C5orf56Q8N8D9 126 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 NPBQ8NG41 125 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 PRSS22Q9GZN4 317 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 RANBP3Q9H6Z4 567 aaPredicted RBP11.6□□□□□ -0.55
BRCA1-223ENST00000494123 PLSCR3Q9NRY6 295 aa11.6□□□□□ -0.55
BRCA1-223ENST00000494123 METTL1Q9UBP6 276 aaKnown RBP11.6□□□□□ -0.55
BRCA1-223ENST00000494123 FAM240BA0A1B0GVZ2 78 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 H0Y980 276 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 RRHO14718 337 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 SLC25A17O43808 307 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 NDUFA3O95167 84 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 HRASP01112 189 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 SERPINE2P07093 398 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 LPAR6P43657 344 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 BRWD1-AS2P59051 145 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 BLCAPP62952 87 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 PSG5Q15238 335 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 CENPSQ8N2Z9 138 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 FAM71E2Q8N5Q1 922 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.59□□□□□ -0.55
BRCA1-223ENST00000494123 Q8N9W7 124 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 ADAD2Q8NCV1 583 aaKnown RBP11.59□□□□□ -0.55
BRCA1-223ENST00000494123 AIFM2Q9BRQ8 373 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 NAA60Q9H7X0 242 aa11.59□□□□□ -0.55
BRCA1-223ENST00000494123 CRYM-AS1A6NIL9 109 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 SH2D7A6NKC9 451 aaPredicted RBP11.58□□□□□ -0.56
BRCA1-223ENST00000494123 B3GALNT1O75752 331 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 S1PR2O95136 353 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 SLC6A1P30531 599 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 RAG2P55895 527 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 TAS2R31P59538 309 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 C5orf64Q2M2E5 130 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 ENKURQ8TC29 256 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 TAF15Q92804 592 aaKnown RBP eCLIP11.58□□□□□ -0.566e-6■□□□□ 11.2
BRCA1-223ENST00000494123 FBXL15Q9H469 300 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 PLEKHA2Q9HB19 425 aa11.58□□□□□ -0.56
BRCA1-223ENST00000494123 FAM212BQ9NTI7 297 aaPredicted RBP11.58□□□□□ -0.56
BRCA1-223ENST00000494123 KCNIP3Q9Y2W7 256 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms