RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CCL8P80075 99 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 SDF2L1Q9HCN8 221 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 ZNF319Q9P2F9 582 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 UQCR10Q9UDW1 63 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 WIPI2Q9Y4P8 454 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 H0Y980 276 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 IGFBP7Q16270 282 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 DEPPQ9NTK1 212 aa13.92□□□□□ -0.18
CCDC88B-209ENST00000494080 SRSF4Q08170 494 aaKnown RBP13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 OR4P4Q8NGL7 312 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 PARD6GQ9BYG4 376 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 CT45A6P0DMU7 189 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 CT45A5P0DMU8 189 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 CT45A7P0DMV0 189 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 SLC25A53Q5H9E4 307 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 CT45A1Q5HYN5 189 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 CT45A3Q8NHU0 189 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 PRR33A8MZF0 331 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 POM121L2Q96KW2 1035 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 CHRDL1Q9BU40 450 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 SLC45A2Q9UMX9 530 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 PLXNA4Q9HCM2 1894 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 hADV38S2A0JD32 116 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 CA11O75493 328 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 FCER1GP30273 86 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 MRPS11P82912 194 aaKnown RBP13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 PLAURQ03405 335 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 ASPHD2Q6ICH7 369 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 FAM166AQ6J272 317 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 ZNF818PQ6ZRF7 136 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 PRDM14Q9GZV8 571 aa13.91□□□□□ -0.18
CCDC88B-209ENST00000494080 PGLYRP1O75594 196 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 KIAA1644Q3SXP7 199 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 CYP2G1PQ6ZSU1 146 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 RND1Q92730 232 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 GUCD1Q96NT3 240 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 MRPL18Q9H0U6 180 aaKnown RBP13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 SAP30LQ9HAJ7 183 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 CLDN16Q9Y5I7 305 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 OR2H2O95918 312 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 AMBPP02760 352 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 RPL11P62913 178 aaKnown RBP13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 P2RY6Q15077 328 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 J3QR89 54 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 K7ERU9 68 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 GZMHP20718 246 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 TNFSF10P50591 281 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 RTN4RL2Q86UN3 420 aa13.9□□□□□ -0.18
CCDC88B-209ENST00000494080 A6NNC1 897 aa13.9□□□□□ -0.19
CCDC88B-209ENST00000494080 C16orf97H3BN30 126 aa13.9□□□□□ -0.19
CCDC88B-209ENST00000494080 NTN3O00634 580 aaPredicted RBP13.9□□□□□ -0.19
CCDC88B-209ENST00000494080 SRSF10O75494 262 aaKnown RBP13.9□□□□□ -0.19
CCDC88B-209ENST00000494080 COX7A1P24310 79 aa13.9□□□□□ -0.19
CCDC88B-209ENST00000494080 PSG5Q15238 335 aa13.9□□□□□ -0.19
CCDC88B-209ENST00000494080 OR10S1Q8NGN2 331 aa13.9□□□□□ -0.19
CCDC88B-209ENST00000494080 PLXND1Q9Y4D7 1925 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 KIAA2026Q5HYC2 2103 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 A0A0A6YYD4 124 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 ATOH7Q8N100 152 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 R3HDM4Q96D70 268 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 RFNGQ9Y644 331 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 TANC1Q9C0D5 1861 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 IGKV1D-8A0A087WSZ0 117 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 TMEM250H0YL14 139 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 BMPR1BO00238 502 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 SYNGR3O43761 229 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 CBLN1P23435 193 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 TRAT1Q6PIZ9 186 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 CALHM1Q8IU99 346 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 GSX1Q9H4S2 264 aaPredicted RBP13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 DLL3Q9NYJ7 618 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 IL36GQ9NZH8 169 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 RNF7Q9UBF6 113 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 HELTA6NFD8 242 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 OR8I2Q8N0Y5 310 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 SH2D2AQ9NP31 389 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 ZNF835Q9Y2P0 537 aa13.89□□□□□ -0.19
CCDC88B-209ENST00000494080 AHRRA9YTQ3 701 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 PRDX2P32119 198 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 UCP3P55916 312 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 CSRP2Q16527 193 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 COX19Q49B96 90 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 MRPL37Q9BZE1 423 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 LDLRAD4O15165 306 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 COX7A2P2O60397 106 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 RPL24P83731 157 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 OR52L2PQ8NGH6 319 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 HSD17B10Q99714 261 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 C2orf88Q9BSF0 95 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 PPIHO43447 177 aaKnown RBP13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 KLF14Q8TD94 323 aaPredicted RBP13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 TRAV38-1A0A0B4J264 116 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 CLEC3BP05452 202 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 OR4A47Q6IF82 309 aa13.88□□□□□ -0.19
CCDC88B-209ENST00000494080 SERTM2A0A1B0GWG4 89 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 A0A1W2PRD5 423 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 A0A1W2PRF3 423 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 A0A1W2PRM7 423 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 TMEM210A6NLX4 147 aa13.87□□□□□ -0.19
CCDC88B-209ENST00000494080 CSN3P07498 182 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms