RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 TSNAXQ99598 290 aaKnown RBP8.28□□□□□ -1.08
COL6A3-214ENST00000493608 RNF5Q99942 180 aa8.28□□□□□ -1.08
COL6A3-214ENST00000493608 CENPOQ9BU64 300 aa8.28□□□□□ -1.08
COL6A3-214ENST00000493608 MCRIP2Q9BUT9 160 aaKnown RBP8.28□□□□□ -1.08
COL6A3-214ENST00000493608 TOLLIPQ9H0E2 274 aa8.28□□□□□ -1.08
COL6A3-214ENST00000493608 ZNF580Q9UK33 172 aa8.28□□□□□ -1.08
COL6A3-214ENST00000493608 VSIG4Q9Y279 399 aa8.28□□□□□ -1.08
COL6A3-214ENST00000493608 SRRM4A7MD48 611 aaKnown RBP8.27□□□□□ -1.09
COL6A3-214ENST00000493608 I3L521 148 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 NFYAP23511 347 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-214ENST00000493608 TMEM267Q0VDI3 215 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-214ENST00000493608 ZNF260Q3ZCT1 412 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 ACTBL2Q562R1 376 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 C19orf54Q5BKX5 351 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 HACD4Q5VWC8 232 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 ZNF562Q6V9R5 426 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 PDPNQ86YL7 162 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 H1FOOQ8IZA3 346 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-214ENST00000493608 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-214ENST00000493608 OR1N2Q8NGR9 330 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 GRPEL2Q8TAA5 225 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 GPR61Q9BZJ8 451 aa8.27□□□□□ -1.09
COL6A3-214ENST00000493608 FOXA2Q9Y261 457 aaPredicted RBP8.27□□□□□ -1.09
COL6A3-214ENST00000493608 SEC14L6B5MCN3 397 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 ARPC1BO15143 372 aaKnown RBP8.26□□□□□ -1.09
COL6A3-214ENST00000493608 SHOXO15266 292 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 SSX5O60225 188 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 CNIH1O95406 144 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 IGLV2-23P01705 113 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 IGHV3-11P01762 117 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 FCER2P06734 321 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 DTYMKP23919 212 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 CRIP2P52943 208 aaPredicted RBP8.26□□□□□ -1.09
COL6A3-214ENST00000493608 GNG2P59768 71 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 LSM3P62310 102 aaKnown RBP8.26□□□□□ -1.09
COL6A3-214ENST00000493608 FXYD3Q14802 87 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 SRSF7Q16629 238 aaKnown RBP eCLIP8.26□□□□□ -1.09
COL6A3-214ENST00000493608 ASPHD1Q5U4P2 390 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 OR5T1Q8NG75 326 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 HARBI1Q96MB7 349 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.26□□□□□ -1.09
COL6A3-214ENST00000493608 RHBDL2Q9NX52 303 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 SORL1Q92673 2214 aa8.26□□□□□ -1.09
COL6A3-214ENST00000493608 TRAV18A0A075B6X5 111 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 LINC00473A8K010 186 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 CRYGBP07316 175 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 APELAP0DMC3 54 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 PTHLHP12272 177 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 DUTP33316 252 aaKnown RBP8.25□□□□□ -1.09
COL6A3-214ENST00000493608 ECI1P42126 302 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 SLURP1P55000 103 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 TPPP2P59282 170 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 SSBP2P81877 361 aaPredicted RBP8.25□□□□□ -1.09
COL6A3-214ENST00000493608 DGCR2P98153 550 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 ZNF616Q08AN1 781 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 FHL3Q13643 280 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 ARL6IP1Q15041 203 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 KCTD21Q4G0X4 260 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 AKIRIN2Q53H80 203 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 C9orf66Q5T8R8 295 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 IDO2Q6ZQW0 420 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 Q6ZS49 121 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 GVQW1Q8N7I0 195 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 DCUN1D4Q92564 292 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 ARPC1AQ92747 370 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 SLC25A38Q96DW6 304 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 PRR25Q96S07 402 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 ZNF355PQ9NSJ1 428 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 SCOCQ9UIL1 159 aa8.25□□□□□ -1.09
COL6A3-214ENST00000493608 IGHV4OR15-8A0A075B7B6 117 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 A0A087WW49 117 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 IGKV1D-13A0A0B4J2D9 117 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 TUSC2O75896 110 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 SPDEFO95238 335 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 DIRAS3O95661 229 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 CRYZL1O95825 349 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 TRGV3P03979 118 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 OR8U8P0C7N1 319 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 IGKV1-13P0DP09 117 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 LGALS7P47929 136 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 RPL30P62888 115 aaKnown RBP8.24□□□□□ -1.09
COL6A3-214ENST00000493608 RUNX1Q01196 453 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 DEFA5Q01523 94 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 TAGLNQ01995 201 aaKnown RBP8.24□□□□□ -1.09
COL6A3-214ENST00000493608 CBX3Q13185 183 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 RTL8BQ17RB0 113 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 MRGPRG-AS1Q2M3A8 158 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 TMEM177Q53S58 311 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 OR2B11Q5JQS5 317 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 CNIH2Q6PI25 160 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 TCTEX1D1Q8N7M0 179 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 DLX4Q92988 240 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-214ENST00000493608 DCUN1D5Q9BTE7 237 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 DCSTAMPQ9H295 470 aa8.24□□□□□ -1.09
COL6A3-214ENST00000493608 MEIS3P1A6NDR6 274 aa8.23□□□□□ -1.09
COL6A3-214ENST00000493608 LINC01619G3V211 115 aa8.23□□□□□ -1.09
COL6A3-214ENST00000493608 FCGR3BO75015 233 aa8.23□□□□□ -1.09
COL6A3-214ENST00000493608 SCGNO76038 276 aa8.23□□□□□ -1.09
COL6A3-214ENST00000493608 HLA-DQB1P01920 261 aa8.23□□□□□ -1.09
COL6A3-214ENST00000493608 CTXN2P0C2S0 81 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms