RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TMEM86BQ8N661 226 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 OR4C13Q8NGP0 309 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 OSR1Q8TAX0 266 aaPredicted RBP11.16□□□□□ -0.62
C9orf3-221ENST00000489562 ZNF418Q8TF45 676 aaPredicted RBP11.16□□□□□ -0.62
C9orf3-221ENST00000489562 CAPSLQ8WWF8 208 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 FLYWCH2Q96CP2 140 aaKnown RBP11.16□□□□□ -0.62
C9orf3-221ENST00000489562 GPHA2Q96T91 129 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 AIFM2Q9BRQ8 373 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 SOX21Q9Y651 276 aaPredicted RBP11.16□□□□□ -0.62
C9orf3-221ENST00000489562 POMT1Q9Y6A1 747 aa11.16□□□□□ -0.62
C9orf3-221ENST00000489562 FN1P02751 2386 aaKnown RBP11.16□□□□□ -0.62
C9orf3-221ENST00000489562 IGHV3-72A0A0B4J1Y9 119 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 MDFIC2A0A1B0GVS7 189 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 INMT-MINDY4F8WBC2 141 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 H3BUX3 64 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 PRAF2O60831 178 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 DHFRP00374 187 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 IGKV1D-33P01593 117 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 IGKV1-33P01594 117 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 SERPINE2P07093 398 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 SNRNP70P08621 437 aaKnown RBP11.15□□□□□ -0.62
C9orf3-221ENST00000489562 OR4E1P0C645 316 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 LINC00205P59089 165 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 SRPXP78539 464 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 OXA1LQ15070 435 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 C4orf46Q504U0 113 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 TMEM177Q53S58 311 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 ZNF48Q96MX3 618 aaPredicted RBP11.15□□□□□ -0.62
C9orf3-221ENST00000489562 PLEKHA2Q9HB19 425 aa11.15□□□□□ -0.62
C9orf3-221ENST00000489562 MXRA5Q9NR99 2828 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 ATG12O94817 140 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 SFT2D2O95562 160 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 CRYZL1O95825 349 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 HPRT1P00492 218 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 HRASP01112 189 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 IFNA2P01563 188 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 HLA-AP01891 365 aaKnown RBP11.14□□□□□ -0.63
C9orf3-221ENST00000489562 IL5P05113 134 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 OR5AC1P0C628 307 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 TMEM11P17152 192 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 ANXA7P20073 488 aaKnown RBP11.14□□□□□ -0.63
C9orf3-221ENST00000489562 VAMP1P23763 118 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 UCP1P25874 307 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 PAX6P26367 422 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 LGALS7P47929 136 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 RIPPLY3P57055 190 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 SUPT4H1P63272 117 aaKnown RBP11.14□□□□□ -0.63
C9orf3-221ENST00000489562 PPP1R1AQ13522 171 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 HES1Q14469 280 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 OR2B11Q5JQS5 317 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 LIAT1Q6ZQX7 453 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 C16orf82Q7Z2V1 217 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 LYG2Q86SG7 212 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 SIGLECL1Q8N7X8 197 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 OR8H1Q8NGG4 311 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 PIFOQ8TCI5 191 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 CHPT1Q8WUD6 406 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 EAF1Q96JC9 268 aaPredicted RBP11.14□□□□□ -0.63
C9orf3-221ENST00000489562 JMJD8Q96S16 334 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 TP53RKQ96S44 253 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 TSNAXQ99598 290 aaKnown RBP11.14□□□□□ -0.63
C9orf3-221ENST00000489562 TMEM222Q9H0R3 208 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 COMMD9Q9P000 198 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 TCF19Q9Y242 345 aa11.14□□□□□ -0.63
C9orf3-221ENST00000489562 A0A0A6YYJ9 748 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 SHOXO15266 292 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 SPDEFO95238 335 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 IGKV1-16P04430 117 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 VSIG10L2P0DP72 767 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 SPNP16150 400 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 BRWD1-AS2P59051 145 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 RPS16P62249 146 aaKnown RBP11.13□□□□□ -0.63
C9orf3-221ENST00000489562 DHRS2Q13268 280 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 Q8N6K4 173 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 GLYATL2Q8WU03 294 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 IL22RA2Q969J5 263 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 HARBI1Q96MB7 349 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 GPN1Q9HCN4 374 aaPredicted RBP11.13□□□□□ -0.63
C9orf3-221ENST00000489562 C1RLQ9NZP8 487 aa11.13□□□□□ -0.63
C9orf3-221ENST00000489562 C9orf170A2RU37 121 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 RAMP3O60896 148 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 DUS4LO95620 317 aaKnown RBP11.12□□□□□ -0.63
C9orf3-221ENST00000489562 CDS2O95674 445 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 IGHV4-59P01825 116 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 NQO2P16083 231 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 LPAR6P43657 344 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 RAB25P57735 213 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 ERVK-16P61578 105 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 TMEM187Q14656 261 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 SLC9A3R2Q15599 337 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 ZNF585BQ52M93 769 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 LGI3Q8N145 548 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 COQ8AQ8NI60 647 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 RAB18Q9NP72 206 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 VPREB3Q9UKI3 123 aa11.12□□□□□ -0.63
C9orf3-221ENST00000489562 A0A0B4J2A0 478 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 DUXBA0A1W2PPF3 345 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 A6NDX4 124 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 SNRPGP15A8MWD9 76 aa11.11□□□□□ -0.63
C9orf3-221ENST00000489562 CLDN34H7C241 214 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms