RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 MAP3K7CLP57077 242 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 PPP1R1AQ13522 171 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 GNA13Q14344 377 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 JOSD1Q15040 202 aaPredicted RBP0.87□□□□□ -2.27
PTPN4-212ENST00000488896 ZNF791Q3KP31 576 aaPredicted RBP0.87□□□□□ -2.27
PTPN4-212ENST00000488896 LCN8Q6JVE9 175 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 SCGB1D4Q6XE38 83 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 SPATA12Q7Z6I5 190 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 SLC51BQ86UW2 128 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 COMMD7Q86VX2 200 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 LHFPL1Q86WI0 220 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 LRRC28Q86X40 367 aaPredicted RBP0.87□□□□□ -2.27
PTPN4-212ENST00000488896 BAP18Q8IXM2 172 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 C1orf174Q8IYL3 243 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 DAND5Q8N907 189 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 OR10D3Q8NH80 312 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 RPS4Y2Q8TD47 263 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 TLCD1Q96CP7 247 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 SLC35G5Q96KT7 338 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 PACRGQ96M98 296 aaPredicted RBP0.87□□□□□ -2.27
PTPN4-212ENST00000488896 OR7D2Q96RA2 312 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 NAA38Q9BRA0 125 aaKnown RBP0.87□□□□□ -2.27
PTPN4-212ENST00000488896 LLPHQ9BRT6 129 aaKnown RBP0.87□□□□□ -2.27
PTPN4-212ENST00000488896 TMEM109Q9BVC6 243 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 DERL2Q9GZP9 239 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 MS4A6AQ9H2W1 248 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 FGFR1OP2Q9NVK5 253 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 DOK5Q9P104 306 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 FREM1Q5H8C1 2179 aa0.87□□□□□ -2.27
PTPN4-212ENST00000488896 MALRD1Q5VYJ5 2156 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 TMED7-TICAM2A0A0A6YYA0 188 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 A0A1W2PQD3 144 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 F5H768 121 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 TXNDC9O14530 226 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 COPEO14579 308 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 HPGDSO60760 199 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 DEXIO95424 95 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 ATP5G1P05496 136 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 HLA-DQB2P05538 268 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 RPS12P25398 132 aaKnown RBP0.86□□□□□ -2.27
PTPN4-212ENST00000488896 CDC34P49427 236 aaPredicted RBP0.86□□□□□ -2.27
PTPN4-212ENST00000488896 H2BFSP57053 126 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 TMEM33P57088 247 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 ERHP84090 104 aaKnown RBP0.86□□□□□ -2.27
PTPN4-212ENST00000488896 SLC38A11Q08AI6 406 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 COTL1Q14019 142 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 HSP90B2PQ58FF3 399 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 PABPC1L2AQ5JQF8 200 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 CST9Q5W186 159 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 DNM1P34Q6PK57 102 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 FAM151BQ6UXP7 276 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 RASSF6Q6ZTQ3 369 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 SPATA24Q86W54 205 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 TMEM251Q8N6I4 163 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 NATD1Q8N6N6 113 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 OR2D3Q8NGH3 330 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 OR52E4Q8NGH9 312 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 OR13C8Q8NGS7 320 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 OR5J2Q8NH18 312 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 CLDND2Q8NHS1 167 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 LHFPL5Q8TAF8 219 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 Q8WTZ3 238 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 RNASE6Q93091 150 aaKnown RBP0.86□□□□□ -2.27
PTPN4-212ENST00000488896 FAM96AQ9H5X1 160 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 SPANXB1Q9NS25 103 aaPredicted RBP0.86□□□□□ -2.27
PTPN4-212ENST00000488896 BABAM2Q9NXR7 383 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 POLR3HQ9Y535 204 aaPredicted RBP0.86□□□□□ -2.27
PTPN4-212ENST00000488896 ATP6V1DQ9Y5K8 247 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 SIPA1L1O43166 1804 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 TENM3Q9P273 2699 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 ZNF532Q9HCE3 1301 aa0.86□□□□□ -2.27
PTPN4-212ENST00000488896 DICER1Q9UPY3 1922 aaKnown RBP0.85□□□□□ -2.27
PTPN4-212ENST00000488896 THSD7AQ9UPZ6 1657 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 A0A0A6YYH2 397 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 TRGV5A0A0B4J1U4 118 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 TMEM269A0A1B0GVZ9 245 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 TMEM213A2RRL7 107 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 C5orf49A4QMS7 147 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 A6NJ64 397 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 H0Y980 276 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 M0QZ92 97 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 TNNC2P02585 160 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 APOEP02649 317 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 REG1AP05451 166 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 BPGMP07738 259 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 ZNF705DP0CH99 300 aaPredicted RBP0.85□□□□□ -2.27
PTPN4-212ENST00000488896 ZNF705BP0CI00 300 aaPredicted RBP0.85□□□□□ -2.27
PTPN4-212ENST00000488896 PRB4P10163 310 aaPredicted RBP0.85□□□□□ -2.27
PTPN4-212ENST00000488896 CD24P25063 80 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 PSMB6P28072 239 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 IDH3GP51553 393 aaPredicted RBP0.85□□□□□ -2.27
PTPN4-212ENST00000488896 TCL1AP56279 114 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 TAS2R30P59541 319 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 RPL30P62888 115 aaKnown RBP0.85□□□□□ -2.27
PTPN4-212ENST00000488896 ITGB3BPQ13352 177 aaPredicted RBP0.85□□□□□ -2.27
PTPN4-212ENST00000488896 RSU1Q15404 277 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 LGALS9BQ3B8N2 356 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 SAPCD1Q5SSQ6 148 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 FAM201AQ5SY85 155 aa0.85□□□□□ -2.27
PTPN4-212ENST00000488896 ZNF705AQ6ZN79 300 aaPredicted RBP0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms