RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ZNF788Q6ZQV5 615 aa10.07□□□□□ -0.8
HDAC6-230ENST00000488543 CMTM1Q8IZ96 169 aa10.07□□□□□ -0.8
HDAC6-230ENST00000488543 OR5C1Q8NGR4 320 aa10.07□□□□□ -0.8
HDAC6-230ENST00000488543 PPP1R35Q8TAP8 253 aa10.07□□□□□ -0.8
HDAC6-230ENST00000488543 CCL17Q92583 94 aa10.07□□□□□ -0.8
HDAC6-230ENST00000488543 SAP30LQ9HAJ7 183 aa10.07□□□□□ -0.8
HDAC6-230ENST00000488543 SPG11Q96JI7 2443 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 MAP1AP78559 2803 aaPredicted RBP10.06□□□□□ -0.8
HDAC6-230ENST00000488543 A1L4Q6 167 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 LYNX1G3V0Z9 82 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 LY6HO94772 140 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 CDS2O95674 445 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 GYPAP02724 150 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 LYNX1P0DP58 116 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 NQO2P16083 231 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 F2RP25116 425 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 SRPXP78539 464 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 TRAT1Q6PIZ9 186 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 ZNF561Q8N587 486 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 C15orf54Q8N8G6 183 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 OR51H1Q8NH63 302 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 C5orf30Q96GV9 206 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 MS4A5Q9H3V2 200 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 CGB3P0DN86 165 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 CGB7P0DN87 165 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 IRF2P14316 349 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 FABP9Q0Z7S8 132 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 HNF4GQ14541 408 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 GPR157Q5UAW9 335 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 ZNF343Q6P1L6 599 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 DRAM1Q8N682 238 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 OR5D13Q8NGL4 314 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 CCL13Q99616 98 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 EGLN1Q9GZT9 426 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 NCOR1P1Q9H4R4 102 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 C11orf1Q9H5F2 150 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 LAMP3Q9UQV4 416 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 MMP24Q9Y5R2 645 aa10.06□□□□□ -0.8
HDAC6-230ENST00000488543 S100A6P06703 90 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 TMEM267Q0VDI3 215 aaPredicted RBP10.05□□□□□ -0.8
HDAC6-230ENST00000488543 FAM216BQ8N7L0 139 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 RFESDQ8TAC1 157 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 KCNS2Q9ULS6 477 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 TMED3Q9Y3Q3 217 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 USP9YO00507 2555 aaPredicted RBP10.05□□□□□ -0.8
HDAC6-230ENST00000488543 IGHV3-43A0A0B4J1X8 118 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 A6NNC1 897 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 TMEM178BH3BS89 294 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 TXNL1O43396 289 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 IGHV3-43DP0DP04 118 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 RAB5AP20339 215 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 HTD2P86397 168 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 EIF4EBP1Q13541 118 aaPredicted RBP10.05□□□□□ -0.8
HDAC6-230ENST00000488543 SPSB3Q6PJ21 355 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 FGFRL1Q8N441 504 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 TMEM252Q8N6L7 170 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 ZNF665Q9H7R5 613 aa10.05□□□□□ -0.8
HDAC6-230ENST00000488543 HELZ2Q9BYK8 2649 aaKnown RBP10.04□□□□□ -0.8
HDAC6-230ENST00000488543 C5orf52A6NGY3 159 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 CHST1O43916 411 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 CTAG1AP78358 180 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 TCF23Q7RTU1 214 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 IL22RA2Q969J5 263 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 SLC35B3Q9H1N7 401 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 UBTD1Q9HAC8 227 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 URGCP-MRPS24S4R325 110 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 DUXBA0A1W2PPF3 345 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 LRRC30A6NM36 301 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 LINC00587B1AMM8 73 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 SPINT2O43291 252 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 CLDN1O95832 211 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 GZMHP20718 246 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 COL8A2P25067 703 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 S100GP29377 79 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 EDDM3BP56851 147 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 VAMP2P63027 116 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 C17orf58Q2M2W7 97 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 NMSQ5H8A3 153 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 ZNF645Q8N7E2 425 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 RBM14Q96PK6 669 aaKnown RBP10.04□□□□□ -0.8
HDAC6-230ENST00000488543 FAM234AQ9H0X4 552 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 TMEM106BQ9NUM4 274 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 RNF150Q9ULK6 438 aa10.04□□□□□ -0.8
HDAC6-230ENST00000488543 RBM7Q9Y580 266 aaKnown RBP10.04□□□□□ -0.8
HDAC6-230ENST00000488543 FBN2P35556 2912 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 F2RL2O00254 374 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 TNFRSF13BO14836 293 aaPredicted RBP10.03□□□□□ -0.8
HDAC6-230ENST00000488543 FCN3O75636 299 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 IGKV1-39P01597 117 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 MT-ND4LP03901 98 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 IGKV1D-39P04432 117 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 RD3LP0DJH9 198 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 FOLR2P14207 255 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 SOHLH1Q5JUK2 328 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 OR2D2Q9H210 308 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 CALYQ9NYX4 217 aa10.03□□□□□ -0.8
HDAC6-230ENST00000488543 WRBO00258 174 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 OR8U8P0C7N1 319 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 LOXL3P58215 753 aa10.02□□□□□ -0.8
HDAC6-230ENST00000488543 MSMO1Q15800 293 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms