RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 ACTL6BO94805 426 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 ZBTB25P24278 435 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 FLOT2Q14254 428 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 SIGIRRQ6IA17 410 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 LAMTOR1Q6IAA8 161 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 SLC25A42Q86VD7 318 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 SRSF12Q8WXF0 261 aaKnown RBP6.81□□□□□ -1.32
COL17A1-207ENST00000488320 MARC2Q969Z3 335 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 LGALS12Q96DT0 336 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 CIB1Q99828 191 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 FAAP24Q9BTP7 215 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 C11orf68Q9H3H3 251 aaKnown RBP6.81□□□□□ -1.32
COL17A1-207ENST00000488320 MRPL27Q9P0M9 148 aaKnown RBP6.81□□□□□ -1.32
COL17A1-207ENST00000488320 CKLFQ9UBR5 152 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 ARL2BPQ9Y2Y0 163 aa6.81□□□□□ -1.32
COL17A1-207ENST00000488320 IGHV4-4A0A075B6R2 117 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 DPPA5A6NC42 116 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 SRRM4A7MD48 611 aaKnown RBP6.8□□□□□ -1.32
COL17A1-207ENST00000488320 GSTT2P0CG29 244 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 GSTT2BP0CG30 244 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 PRSS8Q16651 343 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 VMA21Q3ZAQ7 101 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 SOHLH1Q5JUK2 328 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 MEDAGQ5VYS4 303 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 PVRIGQ6DKI7 326 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 TTC9CQ8N5M4 171 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 POM121L12Q8N7R1 296 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 TEX45Q8NA69 505 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 CD300LFQ8TDQ1 290 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 Q96M66 194 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 SPIN2AQ99865 258 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 SPAG8Q99932 426 aaPredicted RBP6.8□□□□□ -1.32
COL17A1-207ENST00000488320 SPIN2BQ9BPZ2 258 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 ERVK13-1Q9NX77 482 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 OR1A1Q9P1Q5 309 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 S4R3C0 116 aa6.8□□□□□ -1.32
COL17A1-207ENST00000488320 TRAV10A0A0B4J240 114 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 TCRBV3S1A0A5B6 114 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 A8MWP6 167 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 C16orf90A8MZG2 172 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 P0DMU3 169 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 FAM231AP0DMU4 169 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 FAM231CP0DMU5 169 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 CALB2P22676 271 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 RTL8BQ17RB0 113 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 LGALS9BQ3B8N2 356 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 RPL22L1Q6P5R6 122 aaKnown RBP6.79□□□□□ -1.32
COL17A1-207ENST00000488320 IDO2Q6ZQW0 420 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 C6orf201Q7Z4U5 140 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 APRG1Q8IVJ8 170 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 SVOPQ8N4V2 548 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 SETD9Q8NE22 299 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 EEF1AKMT3Q96AZ1 226 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 C5orf66Q9H5L9 145 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 UFC1Q9Y3C8 167 aa6.79□□□□□ -1.32
COL17A1-207ENST00000488320 OR4C46A6NHA9 309 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 TSPAN4O14817 238 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 CDK2AP2O75956 126 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 CLEC3BP05452 202 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 C8orf88P0DMB2 117 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 RRASP10301 218 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 MYOD1P15172 320 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 IGFBP3P17936 291 aaPredicted RBP6.78□□□□□ -1.32
COL17A1-207ENST00000488320 ADMP35318 185 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 UBE2KP61086 200 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 TAGLNQ01995 201 aaKnown RBP6.78□□□□□ -1.32
COL17A1-207ENST00000488320 MRGPRG-AS1Q2M3A8 158 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 ODF3L2Q3SX64 289 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 UNQ9165/PRO28630Q6UXU0 137 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 PTX4Q96A99 478 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 GABARAPL3Q9BY60 117 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 GABARAPL1Q9H0R8 117 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 SCRT2Q9NQ03 307 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 AASSQ9UDR5 926 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 ZNF257Q9Y2Q1 563 aa6.78□□□□□ -1.32
COL17A1-207ENST00000488320 RPL36Q9Y3U8 105 aaKnown RBP6.78□□□□□ -1.32
COL17A1-207ENST00000488320 IGLV2-18A0A075B6J9 118 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 TRAV8-7A0A075B6U6 113 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 IGHV3-35A0A0C4DH35 117 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 A0A1W2PPK0 400 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 HMX3A6NHT5 357 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 DYNC1I1O14576 645 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 CREBL2O60519 120 aaPredicted RBP6.77□□□□□ -1.33
COL17A1-207ENST00000488320 S1PR2O95136 353 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 IFNA10P01566 189 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 GALP22466 123 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 HLA-DMBP28068 263 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 ELLP55199 621 aaPredicted RBP6.77□□□□□ -1.33
COL17A1-207ENST00000488320 HLA-DRB3P79483 266 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 TPBGQ13641 420 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 TMEM187Q14656 261 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 ATP6AP1Q15904 470 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 ZNF880Q6PDB4 577 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 C19orf35Q6ZS72 473 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 MOB1BQ7L9L4 216 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 AMIGO2Q86SJ2 522 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 Q8N1X5 172 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.77□□□□□ -1.33
COL17A1-207ENST00000488320 OR13C5Q8NGS8 318 aa6.77□□□□□ -1.33
COL17A1-207ENST00000488320 CCDC140Q96MF4 163 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms