RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 OR9G1Q8NH87 305 aa13.71□□□□□ -0.21
VIM-205ENST00000485947 CT45A3Q8NHU0 189 aa13.71□□□□□ -0.21
VIM-205ENST00000485947 IFI27L2Q9H2X8 130 aa13.71□□□□□ -0.21
VIM-205ENST00000485947 MINOS1-NBL1R4GNA1 71 aa13.71□□□□□ -0.21
VIM-205ENST00000485947 A0A0B4J2A0 478 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 ODF3BA8MYP8 253 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 H3BUX3 64 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 RAB29O14966 203 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 MPPED1O15442 326 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 PGLYRP1O75594 196 aaPredicted RBP13.7□□□□□ -0.22
VIM-205ENST00000485947 IGLV2-14P01704 120 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 GNG10P50151 68 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 ZNF134P52741 427 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 RRAS2P62070 204 aaPredicted RBP13.7□□□□□ -0.22
VIM-205ENST00000485947 SUPT4H1P63272 117 aaKnown RBP13.7□□□□□ -0.22
VIM-205ENST00000485947 PRB3Q04118 309 aaPredicted RBP13.7□□□□□ -0.22
VIM-205ENST00000485947 ZNF66Q6ZN08 573 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 TBC1D26Q86UD7 250 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 C12orf45Q8N5I9 185 aaPredicted RBP13.7□□□□□ -0.22
VIM-205ENST00000485947 OR52B4Q8NGK2 314 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 MITD1Q8WV92 249 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 PHB2Q99623 299 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 MED28Q9H204 178 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 SHPKQ9UHJ6 478 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 PITPNC1Q9UKF7 332 aa13.7□□□□□ -0.22
VIM-205ENST00000485947 IGHV2-26A0A0B4J1V2 119 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 HMX3A6NHT5 357 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 J3QR06 171 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 M0QZ24 198 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 SLC31A2O15432 143 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 SSNA1O43805 119 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 COX7A1P24310 79 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 PRRX1P54821 245 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 CATR1Q13166 79 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 FAM71F2Q6NXP2 309 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 TREML4Q6UXN2 200 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 ABHD12Q8N2K0 398 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 TCTEX1D1Q8N7M0 179 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 COQ8AQ8NI60 647 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 TAF15Q92804 592 aaKnown RBP eCLIP13.69□□□□□ -0.22
VIM-205ENST00000485947 LEAP2Q969E1 77 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 ABHD14BQ96IU4 210 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 HSD17B10Q99714 261 aaKnown RBP13.69□□□□□ -0.22
VIM-205ENST00000485947 CLEC7AQ9BXN2 247 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 LIN7CQ9NUP9 197 aaKnown RBP13.69□□□□□ -0.22
VIM-205ENST00000485947 SDHAF2Q9NX18 166 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 RNF150Q9ULK6 438 aa13.69□□□□□ -0.22
VIM-205ENST00000485947 PIGBOS1A0A0B4J2F0 54 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 C3orf85A0A1B0GTC6 90 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 H0Y980 276 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 TOR1AO14656 332 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 IGHV3-7P01780 117 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 ARG1P05089 322 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 F2RP25116 425 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 IL3RAP26951 378 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 SRPXP78539 464 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 EIF4EBP1Q13541 118 aaPredicted RBP13.68□□□□□ -0.22
VIM-205ENST00000485947 OR4C13Q8NGP0 309 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 CASTOR1Q8WTX7 329 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 S1PR3Q99500 378 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 NPFFR1Q9GZQ6 430 aa13.68□□□□□ -0.22
VIM-205ENST00000485947 FAM212BQ9NTI7 297 aaPredicted RBP13.68□□□□□ -0.22
VIM-205ENST00000485947 ZNF137PP52743 207 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 TMEM187Q14656 261 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 UTF1Q5T230 341 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 ODF3L1Q8IXM7 274 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 LYG1Q8N1E2 194 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 C17orf50Q8WW18 174 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 C5orf30Q96GV9 206 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 AMMECR1Q9Y4X0 333 aaPredicted RBP13.67□□□□□ -0.22
VIM-205ENST00000485947 TRRAPQ9Y4A5 3859 aa13.67□□□□□ -0.22
VIM-205ENST00000485947 SAA2-SAA4A0A096LPE2 208 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 A0A1W2PPE3 182 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 TNFSF12O43508 249 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 IGLV1-47P01700 117 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 OR5AC1P0C628 307 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 SAA2P0DJI9 122 aaPredicted RBP13.66□□□□□ -0.22
VIM-205ENST00000485947 SULT1A3P0DMM9 295 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 SULT1A4P0DMN0 295 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 UCP1P25874 307 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 HLA-DRB5Q30154 266 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 LRTM2Q8N967 370 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 OR10X1Q8NGY0 326 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 PIFOQ8TCI5 191 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 ADTRPQ96IZ2 230 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 TP53RKQ96S44 253 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 TMEM222Q9H0R3 208 aa13.66□□□□□ -0.22
VIM-205ENST00000485947 M0R1X1 148 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 DUTP33316 252 aaKnown RBP13.65□□□□□ -0.22
VIM-205ENST00000485947 KIR2DS2P43631 304 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 THBS3P49746 956 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 ARHGDIBP52566 201 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 PDLIM3Q53GG5 364 aaPredicted RBP13.65□□□□□ -0.22
VIM-205ENST00000485947 ZNF833PQ6ZTB9 187 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 LGI3Q8N145 548 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 OR51H1Q8NH63 302 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 OR2T6Q8NHC8 308 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 GLYATL2Q8WU03 294 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 IL22RA2Q969J5 263 aa13.65□□□□□ -0.22
VIM-205ENST00000485947 ZNF251Q9BRH9 671 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms