RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 C5orf24Q7Z6I8 188 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 HOGA1Q86XE5 327 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 COMMD1Q8N668 190 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 GVQW1Q8N7I0 195 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 C5orf56Q8N8D9 126 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 OR4S2Q8NH73 311 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 MCFD2Q8NI22 146 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 PIFOQ8TCI5 191 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 ISOC1Q96CN7 298 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 R3HDM4Q96D70 268 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 HSD17B10Q99714 261 aaKnown RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 ZNF2Q9BSG1 426 aaPredicted RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 ZNF702PQ9H963 129 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 SCPEP1Q9HB40 452 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 CCDC59Q9P031 241 aaKnown RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 RSL24D1Q9UHA3 163 aaKnown RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 ELF5Q9UKW6 265 aaPredicted RBP6.41□□□□□ -1.38
USP40-216ENST00000485943 A3GALT2U3KPV4 340 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 CUBNO60494 3623 aa6.41□□□□□ -1.38
USP40-216ENST00000485943 ZNF736B4DX44 427 aaPredicted RBP6.4□□□□□ -1.38
USP40-216ENST00000485943 SULT1C2O00338 296 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 SPDEFO95238 335 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 CRYZL1O95825 349 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 PTHLHP12272 177 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 ELK1P19419 428 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 FAUP35544 74 aaKnown RBP6.4□□□□□ -1.38
USP40-216ENST00000485943 LGALS7P47929 136 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 RAB25P57735 213 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 PROK1P58294 105 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 MRPS10P82664 201 aaKnown RBP6.4□□□□□ -1.38
USP40-216ENST00000485943 CTF1Q16619 201 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 SCGB2B2Q4G0G5 96 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 UTF1Q5T230 341 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 TEX38Q6PEX7 206 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 H1FOOQ8IZA3 346 aaPredicted RBP6.4□□□□□ -1.38
USP40-216ENST00000485943 DMBX1Q8NFW5 382 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 RNASE11Q8TAA1 199 aaKnown RBP6.4□□□□□ -1.38
USP40-216ENST00000485943 VSTM2AQ8TAG5 236 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 FAM110DQ8TAY7 271 aaPredicted RBP6.4□□□□□ -1.38
USP40-216ENST00000485943 CFHR4Q92496 578 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 ST6GALNAC6Q969X2 333 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 RNF5Q99942 180 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 SDHAF2Q9NX18 166 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 TAS2R8Q9NYW2 309 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 LINC00527Q9UJ94 153 aa6.4□□□□□ -1.38
USP40-216ENST00000485943 TSSC4Q9Y5U2 329 aaPredicted RBP6.4□□□□□ -1.38
USP40-216ENST00000485943 FABP12A6NFH5 140 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 FAM90A9PA6NNJ1 464 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 DISC1C4P0D8 188 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 H0YJW9 148 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 RRHO14718 337 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 TNFSF12O43508 249 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 SLC25A17O43808 307 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 RBMXL2O75526 392 aaKnown RBP6.39□□□□□ -1.39
USP40-216ENST00000485943 HRASP01112 189 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 PPYP01298 95 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 HRH1P35367 487 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 TAS2R19P59542 299 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 SPCS2Q15005 226 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 C5orf64Q2M2E5 130 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 SPANXN2Q5MJ10 180 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 PYHIN1Q6K0P9 492 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 ZNF66Q6ZN08 573 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 ZNF329Q86UD4 541 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 NDUFA11Q86Y39 141 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 STPG2Q8N412 459 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 ZBTB34Q8NCN2 500 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 OR51H1Q8NH63 302 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 GRPEL2Q8TAA5 225 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 OSR1Q8TAX0 266 aaPredicted RBP6.39□□□□□ -1.39
USP40-216ENST00000485943 DPF1Q92782 380 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 PARP12Q9H0J9 701 aaKnown RBP6.39□□□□□ -1.39
USP40-216ENST00000485943 MMP27Q9H306 513 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 FBXL15Q9H469 300 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 HRASLSQ9HDD0 168 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 NDUFA13Q9P0J0 144 aa6.39□□□□□ -1.39
USP40-216ENST00000485943 FBN1P35555 2871 aaKnown RBP6.38□□□□□ -1.39
USP40-216ENST00000485943 IGKV1-6A0A0C4DH72 117 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 A0A1W2PN81 502 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 H3BMQ9 156 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CYB5BO43169 146 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 SSX5O60225 188 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CT45A6P0DMU7 189 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CT45A5P0DMU8 189 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CT45A7P0DMV0 189 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CD28P10747 220 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 AADACP22760 399 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CHRNA7P36544 502 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 RFX2P48378 723 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 F2RL1P55085 397 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 AP3S2P59780 193 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 SRSF4Q08170 494 aaKnown RBP6.38□□□□□ -1.39
USP40-216ENST00000485943 EBI3Q14213 229 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 TNXAQ16473 311 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 PYDC2Q56P42 97 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 UNQ5815/PRO19632Q6UWF5 114 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 LAX1Q8IWV1 398 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 Q8N2B8 174 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 Q8N9W7 124 aa6.38□□□□□ -1.39
USP40-216ENST00000485943 CCDC71LQ8N9Z2 235 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms