RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NUDT8Q8WV74 236 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 PHF7Q9BWX1 381 aaPredicted RBP11.57□□□□□ -0.56
COL6A3-209ENST00000472056 OR2H1Q9GZK4 316 aa11.57□□□□□ -0.56
COL6A3-209ENST00000472056 SRIP30626 198 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 DMRTA1Q5VZB9 504 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 TMEM252Q8N6L7 170 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 KLK13Q9UKR3 277 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 MGST2Q99735 147 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 RIF1Q5UIP0 2472 aaKnown RBP11.56□□□□□ -0.56
COL6A3-209ENST00000472056 ARL14EPLP0DKL9 152 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 C8orf88P0DMB2 117 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 C1QL4Q86Z23 238 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 H3BRM9 83 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 TNFRSF9Q07011 255 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 SIGMAR1Q99720 223 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 LRRC61Q9BV99 259 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 HKR1P10072 659 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF146Q15072 292 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 EBLN2Q6P2I7 272 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 LIMS2Q7Z4I7 341 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 GATAD1Q8WUU5 269 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 TMUB1Q9BVT8 246 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 PARLQ9H300 379 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 MS4A5Q9H3V2 200 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 SDHCQ99643 169 aaPredicted RBP11.56□□□□□ -0.56
COL6A3-209ENST00000472056 ASIPP42127 132 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 APCDD1LQ8NCL9 501 aa11.56□□□□□ -0.56
COL6A3-209ENST00000472056 LOC390937A0A1W2PQ73 354 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 C6orf106Q9H6K1 298 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-209ENST00000472056 CCL28Q9NRJ3 127 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 RNF7Q9UBF6 113 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 FMC1Q96HJ9 113 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 ANAPC13Q9BS18 74 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 CBLN4Q9NTU7 201 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 PPIHO43447 177 aaKnown RBP11.55□□□□□ -0.56
COL6A3-209ENST00000472056 ABHD3Q8WU67 409 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 MS4A4AQ96JQ5 239 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 TMIGD3P0DMS9 266 aaPredicted RBP11.55□□□□□ -0.56
COL6A3-209ENST00000472056 RHOVQ96L33 236 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 ST20Q9HBF5 79 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 UBE2CO00762 179 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 ACER2Q5QJU3 275 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 OR4D5Q8NGN0 318 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 GNRHR2Q96P88 292 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 TCF20Q9UGU0 1960 aaKnown RBP11.55□□□□□ -0.56
COL6A3-209ENST00000472056 DEFB108AA8MXU0 73 aa11.55□□□□□ -0.56
COL6A3-209ENST00000472056 A0A0G2JMZ2 1700 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 LRRC37A2A6NM11 1700 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 LRRC37AA6NMS7 1700 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 VSIG10L2P0DP72 767 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 CYP2G1PQ6ZSU1 146 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-209ENST00000472056 TTC9CQ8N5M4 171 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 AGRNO00468 2067 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 PNKDQ8N490 385 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 DMRTA2Q96SC8 542 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 PTCRAQ6ISU1 281 aaPredicted RBP11.54□□□□□ -0.56
COL6A3-209ENST00000472056 GFRALQ6UXV0 394 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF831Q5JPB2 1677 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 TMEM50AO95807 157 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 RND3P61587 244 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 CACNG7P62955 275 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 WNT5BQ9H1J7 359 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 CXCL10P02778 98 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 DLX6P56179 175 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 CTAG1AP78358 180 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 KIAA1549Q9HCM3 1950 aa11.54□□□□□ -0.56
COL6A3-209ENST00000472056 BHLHA15Q7RTS1 189 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-209ENST00000472056 DYNLRB2Q8TF09 96 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 C8orf44Q96CB5 159 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 CCL27Q9Y4X3 112 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 TNFSF15O95150 251 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 EFNB1P98172 346 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF441Q8N8Z8 693 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 OR2K2Q8NGT1 345 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 SSBP4Q9BWG4 385 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-209ENST00000472056 SLC25A20O43772 301 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 P2RY6Q15077 328 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 RFESDQ8TAC1 157 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF418Q8TF45 676 aaPredicted RBP11.53□□□□□ -0.56
COL6A3-209ENST00000472056 TM4SF20Q53R12 229 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 C2orf83Q53S99 150 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 RASL11AQ6T310 242 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 A0A1B0GUT8 65 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 IGHV4-34P06331 123 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 LIMS1P48059 325 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 GFERP55789 205 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 SLC25A2Q9BXI2 301 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 PRDM13Q9H4Q3 707 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 DENND4CQ5VZ89 1909 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 MGST3O14880 152 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 C2orf68Q2NKX9 166 aa11.53□□□□□ -0.56
COL6A3-209ENST00000472056 MARCH11A6NNE9 402 aa11.52□□□□□ -0.56
COL6A3-209ENST00000472056 ZNF815PA8K554 130 aa11.52□□□□□ -0.56
COL6A3-209ENST00000472056 H0Y8X5 98 aa11.52□□□□□ -0.56
COL6A3-209ENST00000472056 SHISA5Q8N114 240 aa11.52□□□□□ -0.56
COL6A3-209ENST00000472056 IL36BQ9NZH7 164 aa11.52□□□□□ -0.56
COL6A3-209ENST00000472056 LPAR2Q9HBW0 351 aa11.52□□□□□ -0.56
COL6A3-209ENST00000472056 OVOL2Q9BRP0 275 aa11.52□□□□□ -0.57
COL6A3-209ENST00000472056 FRMPD3Q5JV73 1810 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms