RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 TNRC6AQ8NDV7 1962 aaKnown RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 ARHGEF17Q96PE2 2063 aaPredicted RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 UNC80Q8N2C7 3258 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 TRAV38-1A0A0B4J264 116 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 BLACEA4D250 179 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 TRAPPC2LH3BP13 241 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 DLL1O00548 723 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 ZNF207O43670 478 aaKnown RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 RHBDL1O75783 438 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 OR10J4P0C629 311 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 SMIM10L1P0DMW3 83 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 SSTR5P35346 364 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 P2RY2P41231 377 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 GPR6P46095 362 aaPredicted RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 FXYD3Q14802 87 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 HLA-DQA1Q5Y7H0 255 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 ZNF776Q68DI1 518 aaPredicted RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 OR4A5Q8NH83 315 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 BAHD1Q8TBE0 780 aaPredicted RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 BORCS8Q96FH0 119 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 PERPQ96FX8 193 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 SMIM10Q96HG1 83 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 NPVFQ9HCQ7 196 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 MKI67P46013 3256 aaKnown RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 NCOA6Q14686 2063 aaPredicted RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 TRBV20OR9-2A0A075B6H5 130 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 KRTAP9-6A0A140TA67 174 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 FOXI3A8MTJ6 420 aaPredicted RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 DEGS1O15121 323 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 RAMP3O60896 148 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 NEURL1O76050 574 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 EML2O95834 649 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 LINC00869P0C866 280 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 PSG2P11465 335 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 ADH5P11766 374 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 NTSR1P30989 418 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 EDDM3BP56851 147 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 MYBPHQ13203 477 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 MFAP5Q13361 173 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 TNXAQ16473 311 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 WDR82Q6UXN9 313 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 DEFB128Q7Z7B8 93 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 OR8B3Q8NGG8 313 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 OR2K2Q8NGT1 345 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 OR1F12Q8NHA8 337 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 IL1F10Q8WWZ1 152 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 FGF14Q92915 247 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 GP6Q9HCN6 339 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 TECRQ9NZ01 308 aaKnown RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 WNT16Q9UBV4 365 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 TBC1D29Q9UFV1 150 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 KCNS2Q9ULS6 477 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 PPP1R3CQ9UQK1 317 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 PTRH2Q9Y3E5 179 aaKnown RBP3.58□□□□□ -1.84
VPS50-210ENST00000471188 HS3ST3A1Q9Y663 406 aa3.58□□□□□ -1.84
VPS50-210ENST00000471188 IGKV1D-13A0A0B4J2D9 117 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.57□□□□□ -1.84
VPS50-210ENST00000471188 H3BMH7 237 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 ISLRO14498 428 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 SCTP09683 121 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 IGKV1-13P0DP09 117 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 SLC25A6P12236 298 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 HTR1DP28221 377 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 TCTAP57738 103 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 MEF2CQ06413 473 aaPredicted RBP3.57□□□□□ -1.84
VPS50-210ENST00000471188 HSD52Q0P140 79 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 RAB31Q13636 194 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 CEACAM21Q3KPI0 293 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 OR10J3Q5JRS4 329 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 PRR31Q5SQ13 230 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 EBLN2Q6P2I7 272 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 Q6ZRM9 215 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 OOSP2Q86WS3 158 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 TMEM251Q8N6I4 163 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 TM4SF19Q96DZ7 209 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 MCRIP2Q9BUT9 160 aaKnown RBP3.57□□□□□ -1.84
VPS50-210ENST00000471188 ZNF331Q9NQX6 463 aaPredicted RBP3.57□□□□□ -1.84
VPS50-210ENST00000471188 HILPDAQ9Y5L2 63 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 TSSC4Q9Y5U2 329 aaPredicted RBP3.57□□□□□ -1.84
VPS50-210ENST00000471188 TET1Q8NFU7 2136 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 TEX48A0A1B0GUV7 120 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 SPAARA0A1B0GVQ0 90 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 E9PLN8 166 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 TMPRSS2O15393 492 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 FOXS1O43638 330 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 DHRS3O75911 302 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 APCSP02743 223 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 MT-ND6P03923 174 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 LGALS4P56470 323 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 TFF3Q07654 80 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 FUT7Q11130 342 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 SRSF7Q16629 238 aaKnown RBP eCLIP3.57□□□□□ -1.84
VPS50-210ENST00000471188 HNRNPA1L2Q32P51 320 aaKnown RBP3.57□□□□□ -1.84
VPS50-210ENST00000471188 GCSAMLQ5JQS6 135 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 PRAMEF5Q5TYX0 476 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 PRAMEF6Q5VXH4 476 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 H1FNTQ75WM6 255 aaPredicted RBP3.57□□□□□ -1.84
VPS50-210ENST00000471188 OSR2Q8N2R0 312 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 OR4P4Q8NGL7 312 aa3.57□□□□□ -1.84
VPS50-210ENST00000471188 OR10AG1Q8NH19 301 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms