RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 SUMO1P63165 101 aaKnown RBP9.83□□□□□ -0.84
CPSF3-202ENST00000460593 WDR74Q6RFH5 385 aaPredicted RBP9.83□□□□□ -0.84
CPSF3-202ENST00000460593 OR8I2Q8N0Y5 310 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 LYG1Q8N1E2 194 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 C5orf30Q96GV9 206 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 PRDM6Q9NQX0 595 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 LOC102724200A0A096LPH7 203 aaPredicted RBP9.83□□□□□ -0.84
CPSF3-202ENST00000460593 M0QZ24 198 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 RFPL3SP0C7P2 107 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 NTF3P20783 257 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 YPEL3P61236 119 aaPredicted RBP9.83□□□□□ -0.84
CPSF3-202ENST00000460593 C22orf15Q8WYQ4 148 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 NRN1Q9NPD7 142 aa9.83□□□□□ -0.84
CPSF3-202ENST00000460593 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 PAFAH1B2P68402 229 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 FXYD3Q14802 87 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 ARL6IP6Q8N6S5 226 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 TSTD1Q8NFU3 115 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 LAMTOR2Q9Y2Q5 125 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 TIMM9Q9Y5J7 89 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 ZFHX4Q86UP3 3567 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 IGLV3-12A0A075B6K2 115 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 A0A1W2PPV4 95 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 C17orf98A8MV24 154 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 DEGS1O15121 323 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 SPATA31B1PQ5VZV4 182 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 SSMEM1Q8WWF3 244 aa9.82□□□□□ -0.84
CPSF3-202ENST00000460593 LIN7CQ9NUP9 197 aaKnown RBP9.82□□□□□ -0.84
CPSF3-202ENST00000460593 YTHDF2Q9Y5A9 579 aaKnown RBP9.82□□□□□ -0.84
CPSF3-202ENST00000460593 ZNF716A6NP11 495 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 SELENOTP62341 195 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 SRYQ05066 204 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 COTL1Q14019 142 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 KRTAP27-1Q3LI81 207 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 WIPI1Q5MNZ9 446 aaPredicted RBP9.81□□□□□ -0.84
CPSF3-202ENST00000460593 LEMD1Q68G75 181 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 Q8N7P7 452 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 CPT1CQ8TCG5 803 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 CCDC74BQ96LY2 380 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 C1QTNF5Q9BXJ0 243 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 OR2D2Q9H210 308 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 GPX1P07203 203 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 IGLC2P0DOY2 106 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 IGLC3P0DOY3 106 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 CD27P26842 260 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 CTRLP40313 264 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 CEACAM21Q3KPI0 293 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 MIC13Q5XKP0 118 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 C1orf174Q8IYL3 243 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 FAM58AQ8N1B3 248 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 TECTBQ96PL2 329 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 QTRT1Q9BXR0 403 aaKnown RBP9.81□□□□□ -0.84
CPSF3-202ENST00000460593 DNAJC13O75165 2243 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 ASPMQ8IZT6 3477 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 LOC105371242A0A075B767 164 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 TMPRSS2O15393 492 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 OTX2P32243 289 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 DSCR4P56555 118 aaPredicted RBP9.81□□□□□ -0.84
CPSF3-202ENST00000460593 ARF1P84077 181 aaKnown RBP9.81□□□□□ -0.84
CPSF3-202ENST00000460593 Q8NFD4 153 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 OR2M7Q8NG81 312 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 OR52L2PQ8NGH6 319 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 ST6GALNAC6Q969X2 333 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 HSPB7Q9UBY9 170 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 NAT8BQ9UHF3 227 aa9.81□□□□□ -0.84
CPSF3-202ENST00000460593 IGHV3-43A0A0B4J1X8 118 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 LRRC30A6NM36 301 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 DEFB108AA8MXU0 73 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 FOXH1O75593 365 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 IGHV3-43DP0DP04 118 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 BRWD1-AS2P59051 145 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 RANP62826 216 aaKnown RBP9.8□□□□□ -0.84
CPSF3-202ENST00000460593 MRPL54Q6P161 138 aaKnown RBP9.8□□□□□ -0.84
CPSF3-202ENST00000460593 OR10D3Q8NH80 312 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 STRADBQ9C0K7 418 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 FAM234AQ9H0X4 552 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 ZNF586Q9NXT0 402 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 PRR14LQ5THK1 2151 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 NCKAP5O14513 1909 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 NKX6-3A6NJ46 265 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 PDE6DO43924 150 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 GFRA1P56159 465 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 RAC1P63000 192 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 LTC4SQ16873 150 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 DOLPP1Q86YN1 238 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 RNASE7Q9H1E1 156 aaKnown RBP9.8□□□□□ -0.84
CPSF3-202ENST00000460593 SELENOKQ9Y6D0 94 aa9.8□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A10PA6NDY2 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A18PA6NE21 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A16PA6NEW6 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A20PA6NIJ5 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A8PA6NJQ4 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A7PA6NKC0 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A22PA8MWA6 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A12PA8MX19 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A5PA8MXJ8 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A23PA8MXZ1 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A15PP0C7V4 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A13PP0C7W8 464 aa9.79□□□□□ -0.84
CPSF3-202ENST00000460593 FAM90A14PP0C7W9 464 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms