RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 SSMEM1Q8WWF3 244 aa13.79□□□□□ -0.2
LIME1-202ENST00000444951 TAF15Q92804 592 aaKnown RBP eCLIP13.79□□□□□ -0.2
LIME1-202ENST00000444951 ZNF486Q96H40 463 aaPredicted RBP13.79□□□□□ -0.2
LIME1-202ENST00000444951 WASHC3Q9Y3C0 194 aa13.79□□□□□ -0.2
LIME1-202ENST00000444951 TRAV6A0A075B6T7 132 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 TEX13DA0A0J9YY54 714 aaPredicted RBP13.78□□□□□ -0.2
LIME1-202ENST00000444951 DNAJC9-AS1A6NH13 148 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 MPPED1O15442 326 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 FAM106CPP0CH98 169 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 TMEM11P17152 192 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 SLC6A1P30531 599 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 MC5RP33032 325 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 CBX3Q13185 183 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 RTL8BQ17RB0 113 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 NRARPQ7Z6K4 114 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 OR5AN1Q8NGI8 311 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 PRDM13Q9H4Q3 707 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 BEX1Q9HBH7 125 aa13.78□□□□□ -0.2
LIME1-202ENST00000444951 CRYZL1O95825 349 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 TCRBP04435 133 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 DYNLT3P51808 116 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 HABP2Q14520 560 aaPredicted RBP13.77□□□□□ -0.21
LIME1-202ENST00000444951 AANATQ16613 207 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 SPAG16Q8N0X2 631 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 CENPSQ8N2Z9 138 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 OR2T10Q8NGZ9 312 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 OR5R1Q8NH85 324 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 DDB2Q92466 427 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 EAF1Q96JC9 268 aaPredicted RBP13.77□□□□□ -0.21
LIME1-202ENST00000444951 RITA1Q96K30 269 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 C20orf85Q9H1P6 137 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 PALMDQ9NP74 551 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 NUDT15Q9NV35 164 aa13.77□□□□□ -0.21
LIME1-202ENST00000444951 FAM90A9PA6NNJ1 464 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 RAMP3O60896 148 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 MOSP00540 346 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 IGKV1-16P04430 117 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 HKR1P10072 659 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 F2RP25116 425 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 RAB25P57735 213 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 RND3P61587 244 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 RPS16P62249 146 aaKnown RBP13.76□□□□□ -0.21
LIME1-202ENST00000444951 SLC9A3R2Q15599 337 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 SP6Q3SY56 376 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 CCBE1Q6UXH8 406 aaPredicted RBP13.76□□□□□ -0.21
LIME1-202ENST00000444951 PDPNQ86YL7 162 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 SGMS2Q8NHU3 365 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 TMEM230Q96A57 120 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 CHIAQ9BZP6 476 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 LIN7CQ9NUP9 197 aaKnown RBP13.76□□□□□ -0.21
LIME1-202ENST00000444951 TCF19Q9Y242 345 aa13.76□□□□□ -0.21
LIME1-202ENST00000444951 C3orf85A0A1B0GTC6 90 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 A6NDX4 124 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 NCBP2LA6PVI3 153 aaKnown RBP13.75□□□□□ -0.21
LIME1-202ENST00000444951 RRASP10301 218 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 SPNP16150 400 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 ANXA7P20073 488 aaKnown RBP13.75□□□□□ -0.21
LIME1-202ENST00000444951 CNTFRP26992 372 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 BRWD1-AS2P59051 145 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 TAGLNQ01995 201 aaKnown RBP13.75□□□□□ -0.21
LIME1-202ENST00000444951 THNSL2Q86YJ6 484 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 SGPP2Q8IWX5 399 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 OR4S2Q8NH73 311 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 FLYWCH2Q96CP2 140 aaKnown RBP13.75□□□□□ -0.21
LIME1-202ENST00000444951 TP53RKQ96S44 253 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 ZNF747Q9BV97 191 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 NAA60Q9H7X0 242 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 PITPNC1Q9UKF7 332 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 VPREB3Q9UKI3 123 aa13.75□□□□□ -0.21
LIME1-202ENST00000444951 CRYM-AS1A6NIL9 109 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 SHOXO15266 292 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 KCNAB3O43448 404 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 H2AFB2P0C5Z0 115 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 RPA2P15927 270 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 VAMP1P23763 118 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 KIR2DS2P43631 304 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 LPAR6P43657 344 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 MMDQ15546 238 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 HARBI1Q96MB7 349 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 SLC25A33Q9BSK2 321 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 PRR13Q9NZ81 148 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 NUBP2Q9Y5Y2 271 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 POMT1Q9Y6A1 747 aa13.74□□□□□ -0.21
LIME1-202ENST00000444951 CHST1O43916 411 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 SERPINE2P07093 398 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 OR5AC1P0C628 307 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 F2RL1P55085 397 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 TAS2R31P59538 309 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 EBI3Q14213 229 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 TRIM16LQ309B1 348 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 SLC25A42Q86VD7 318 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 OR4C13Q8NGP0 309 aa13.73□□□□□ -0.21
LIME1-202ENST00000444951 H0Y980 276 aa13.72□□□□□ -0.21
LIME1-202ENST00000444951 GPR137BO60478 399 aa13.72□□□□□ -0.21
LIME1-202ENST00000444951 S1PR2O95136 353 aa13.72□□□□□ -0.21
LIME1-202ENST00000444951 VSIG10L2P0DP72 767 aa13.72□□□□□ -0.21
LIME1-202ENST00000444951 FOXL1Q12952 345 aa13.72□□□□□ -0.21
LIME1-202ENST00000444951 PPP1R1AQ13522 171 aa13.72□□□□□ -0.21
LIME1-202ENST00000444951 RGS21Q2M5E4 152 aa13.72□□□□□ -0.21
LIME1-202ENST00000444951 C4orf46Q504U0 113 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms