RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 GNG12Q9UBI6 72 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 FAM215AQ9Y5M1 114 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 DSPP15924 2871 aaKnown RBP13.28□□□□□ -0.28
SHQ1-202ENST00000444040 HMGB3O15347 200 aaKnown RBP13.28□□□□□ -0.28
SHQ1-202ENST00000444040 HPRT1P00492 218 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 LHBP01229 141 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 MBP02144 154 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 ZNF134P52741 427 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 MEF2BQ02080 365 aaPredicted RBP13.28□□□□□ -0.28
SHQ1-202ENST00000444040 IGFL3Q6UXB1 125 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 Q8N7P7 452 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 ZNRF1Q8ND25 227 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 Q8TCH9 128 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 FAM216AQ8WUB2 273 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 MEGF10Q96KG7 1140 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 TCEAL7Q9BRU2 100 aa13.28□□□□□ -0.28
SHQ1-202ENST00000444040 M0R1B8 84 aa13.27□□□□□ -0.28
SHQ1-202ENST00000444040 F2RL2O00254 374 aa13.27□□□□□ -0.28
SHQ1-202ENST00000444040 FCGR3BO75015 233 aa13.27□□□□□ -0.28
SHQ1-202ENST00000444040 CLN5O75503 358 aa13.27□□□□□ -0.28
SHQ1-202ENST00000444040 NKX6-1P78426 367 aaPredicted RBP13.27□□□□□ -0.28
SHQ1-202ENST00000444040 ZNF674Q2M3X9 581 aa13.27□□□□□ -0.28
SHQ1-202ENST00000444040 FFAR4Q5NUL3 377 aa13.27□□□□□ -0.28
SHQ1-202ENST00000444040 PPP1R35Q8TAP8 253 aa13.27□□□□□ -0.28
SHQ1-202ENST00000444040 CLDN34H7C241 214 aa13.27□□□□□ -0.29
SHQ1-202ENST00000444040 S100A9P06702 114 aaKnown RBP13.27□□□□□ -0.29
SHQ1-202ENST00000444040 GLRXP35754 106 aa13.27□□□□□ -0.29
SHQ1-202ENST00000444040 NCMAPQ5T1S8 102 aa13.27□□□□□ -0.29
SHQ1-202ENST00000444040 ALKBH2Q6NS38 261 aa13.27□□□□□ -0.29
SHQ1-202ENST00000444040 OR6C3Q9NZP0 311 aa13.27□□□□□ -0.29
SHQ1-202ENST00000444040 FAM90A9PA6NNJ1 464 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 CYB5BO43169 146 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 HOXA5P20719 270 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 EIF2S3P41091 472 aaKnown RBP13.26□□□□□ -0.29
SHQ1-202ENST00000444040 MOGAT3Q86VF5 341 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 IFI27L2Q9H2X8 130 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 CGB3P0DN86 165 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 CGB7P0DN87 165 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 RPL39P5Q59GN2 51 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 IGLV3-9A0A075B6K5 115 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 CRYAAP02489 173 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 KLF3P57682 345 aaPredicted RBP13.26□□□□□ -0.29
SHQ1-202ENST00000444040 CTAG1AP78358 180 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 RAB24Q969Q5 203 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 SSX3Q99909 188 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 ACTR3CQ9C0K3 210 aaPredicted RBP13.26□□□□□ -0.29
SHQ1-202ENST00000444040 DOK5Q9P104 306 aa13.26□□□□□ -0.29
SHQ1-202ENST00000444040 EP300Q09472 2414 aaPredicted RBP13.26□□□□□ -0.29
SHQ1-202ENST00000444040 M0R1X1 148 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 RBFOX2O43251 390 aaKnown RBP eCLIP13.25□□□□□ -0.29
SHQ1-202ENST00000444040 C3orf36Q3SXR2 165 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 UTF1Q5T230 341 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 C1orf229Q6ZS94 237 aaPredicted RBP13.25□□□□□ -0.29
SHQ1-202ENST00000444040 CYP2G1PQ6ZSU1 146 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 GATAD1Q8WUU5 269 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 HEATR1Q9H583 2144 aaKnown RBP13.25□□□□□ -0.29
SHQ1-202ENST00000444040 TMEM250H0YL14 139 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 IGHV3-7P01780 117 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 PSMB3P49720 205 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 Q6ZS92 163 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 SSX9Q7RTT3 188 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 OR13D1Q8NGV5 346 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 ITLN1Q8WWA0 313 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 SMIM7Q9BQ49 75 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 ZNF251Q9BRH9 671 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 NAT8Q9UHE5 227 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 WDR83OSQ9Y284 106 aa13.25□□□□□ -0.29
SHQ1-202ENST00000444040 DOCK11Q5JSL3 2073 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 SPRY3O43610 288 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BKO60814 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 KBTBD11O94819 623 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 YIF1AO95070 293 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 TRGC2P03986 189 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BJP06899 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BOP23527 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BBP33778 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 EDDM3BP56851 147 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BDP58876 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BCP62807 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST2H2BEQ16778 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 PDLIM3Q53GG5 364 aaPredicted RBP13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.24□□□□□ -0.29
SHQ1-202ENST00000444040 ZNF709Q8N972 641 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BHQ93079 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 FAM210BQ96KR6 192 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 DIRC2Q96SL1 478 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BNQ99877 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 HIST1H2BMQ99879 126 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 CTDSP1Q9GZU7 261 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 CALYQ9NYX4 217 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 TTC28Q96AY4 2481 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 IFITM10A6NMD0 228 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 SLC31A2O15432 143 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 NDUFS6O75380 124 aaKnown RBP13.24□□□□□ -0.29
SHQ1-202ENST00000444040 DEFA4P12838 97 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 SPCS3P61009 180 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 TLE1Q04724 770 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 C17orf58Q2M2W7 97 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 FAM201AQ5SY85 155 aa13.24□□□□□ -0.29
SHQ1-202ENST00000444040 PRAMEF5Q5TYX0 476 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms