RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 DEFA6Q01524 100 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 BCL2A1Q16548 175 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 KRTAP6-3Q3LI67 103 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 HES3Q5TGS1 186 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 Q6ZQT7 251 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 TCF23Q7RTU1 214 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 SCXQ7RTU7 201 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 HS3ST5Q8IZT8 346 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 SLC25A45Q8N413 288 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 C3orf22Q8N5N4 141 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 BPIFB6Q8NFQ5 453 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 ZNRF2Q8NHG8 242 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 FAM45AQ8TCE6 357 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 RNASEH2CQ8TDP1 164 aaKnown RBP1.58□□□□□ -2.16
VPS41-207ENST00000439468 CASTOR1Q8WTX7 329 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 PDCD6IPQ8WUM4 868 aaKnown RBP1.58□□□□□ -2.16
VPS41-207ENST00000439468 CCDC127Q96BQ5 260 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 CYTH2Q99418 400 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 B9D2Q9BPU9 175 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 PRSS27Q9BQR3 290 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 BBS2Q9BXC9 721 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 EBPLQ9BY08 206 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 ALX4Q9H161 411 aaPredicted RBP1.58□□□□□ -2.16
VPS41-207ENST00000439468 KCNIP2Q9NS61 270 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 OR51B4Q9Y5P0 310 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 MEGF8Q7Z7M0 2845 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 MYH3P11055 1940 aa1.58□□□□□ -2.16
VPS41-207ENST00000439468 ASCC3Q8N3C0 2202 aaKnown RBP1.58□□□□□ -2.16
VPS41-207ENST00000439468 EPPK1P58107 5090 aaKnown RBP1.57□□□□□ -2.16
VPS41-207ENST00000439468 PCNX2A6NKB5 2137 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 TNRC6BQ9UPQ9 1833 aaKnown RBP1.57□□□□□ -2.16
VPS41-207ENST00000439468 IGKV1-12A0A0C4DH73 117 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 A0A1W2PNM2 257 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 GOLGA8IPA6NC78 632 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 ARGFXA6NJG6 315 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 GPR171O14626 319 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 LECT2O14960 151 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 SYNGR2O43760 224 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 FADS2O95864 444 aaKnown RBP1.57□□□□□ -2.16
VPS41-207ENST00000439468 EPPINO95925 133 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 IGKV1D-12P01611 117 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 PSMB9P28065 219 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 ELK4P28324 431 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 APOFQ13790 326 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 XKRXQ6PP77 449 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 SMARCD3Q6STE5 483 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 SSX7Q7RTT5 188 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 MRPL52Q86TS9 123 aaKnown RBP1.57□□□□□ -2.16
VPS41-207ENST00000439468 BOD1L2Q8IYS8 172 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 RPRMLQ8N4K4 120 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 FER1L6-AS1Q8NA97 138 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 KCTD4Q8WVF5 259 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 GTF2H4Q92759 462 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 OR51E2Q9H255 320 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 MS4A12Q9NXJ0 267 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 SLC23A2Q9UGH3 650 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 MCTS1Q9ULC4 181 aaKnown RBP1.57□□□□□ -2.16
VPS41-207ENST00000439468 LINC00588Q9Y4M8 146 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 PHLDA3Q9Y5J5 127 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 SVEP1Q4LDE5 3571 aa1.57□□□□□ -2.16
VPS41-207ENST00000439468 CACNA1EQ15878 2313 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 HYDINQ4G0P3 5121 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 TRBV24-1A0A075B6N3 115 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 A0A1B0GU33 70 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 LINC00854A0A1B0GVQ3 168 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 D6RAR5 112 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 TMEM250H0YL14 139 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 J3QLI3 93 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 CRXO43186 299 aaPredicted RBP1.56□□□□□ -2.16
VPS41-207ENST00000439468 EEF1E1O43324 174 aaKnown RBP1.56□□□□□ -2.16
VPS41-207ENST00000439468 MPZL2O60487 215 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 CDK14O94921 469 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 GPR75O95800 540 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 GYPCP04921 128 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 CTSGP08311 255 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 LIMS3P0CW19 117 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 LIMS4P0CW20 117 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 UGT2B10P36537 528 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 HSPA13P48723 471 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 MP68P56378 58 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 ZCWPW2Q504Y3 356 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 FAM162BQ5T6X4 162 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 NIPAL1Q6NVV3 410 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 SYCE1Q8N0S2 351 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 KRTCAP2Q8N6L1 136 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 ZNF738Q8NE65 137 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 OR10D4PQ8NGN7 298 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 SUN5Q8TC36 379 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 CLDN23Q96B33 292 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 DDIT4LQ96D03 193 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 PYURFQ96I23 114 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 TMEM56Q96MV1 263 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 FAM210AQ96ND0 272 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 SLC19A3Q9BZV2 496 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 ARL6Q9H0F7 186 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 NRBP2Q9NSY0 501 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 NAGKQ9UJ70 344 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 FBXL3Q9UKT7 428 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 COL4A2P08572 1712 aa1.56□□□□□ -2.16
VPS41-207ENST00000439468 MYO3BQ8WXR4 1341 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms