RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 EMP1P54849 157 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 OR4A47Q6IF82 309 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 STPG2Q8N412 459 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 CDC42EP3Q9UKI2 254 aa13.19□□□□□ -0.3
PTPRF-206ENST00000429895 SIGLEC5O15389 551 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 SPATA45Q537H7 98 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 RBM38Q9H0Z9 239 aaKnown RBP13.18□□□□□ -0.3
PTPRF-206ENST00000429895 PRSS53Q2L4Q9 553 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 ABLIM2Q6H8Q1 611 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 GEMIN7Q9H840 131 aaKnown RBP13.18□□□□□ -0.3
PTPRF-206ENST00000429895 BEX4Q9NWD9 120 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-206ENST00000429895 FOXH1O75593 365 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 MUC1P15941 1255 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-206ENST00000429895 NPBWR2P48146 333 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 HINT1P49773 126 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-206ENST00000429895 GZMMP51124 257 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 CRYBA2P53672 197 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 LHFPL5Q8TAF8 219 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 SMCHD1A6NHR9 2005 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 MARCH11A6NNE9 402 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 VAX1Q5SQQ9 334 aa13.18□□□□□ -0.3
PTPRF-206ENST00000429895 TAF15Q92804 592 aaKnown RBP eCLIP13.18□□□□□ -0.36e-7■■□□□ 11.8
PTPRF-206ENST00000429895 TCF21O43680 179 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 AMY1AP04745 511 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 FSTP19883 344 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 HSPE1P61604 102 aaKnown RBP13.17□□□□□ -0.3
PTPRF-206ENST00000429895 FAM159AQ6UWV7 190 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 ELF5Q9UKW6 265 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-206ENST00000429895 C8orf82Q6P1X6 216 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-206ENST00000429895 STRCQ7RTU9 1775 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 IL4P05112 153 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 CRYBB3P26998 211 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 SUMO2P61956 95 aaKnown RBP13.17□□□□□ -0.3
PTPRF-206ENST00000429895 FAM27E3Q08E93 113 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 ZNRF1Q8ND25 227 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 OR4C13Q8NGP0 309 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 PKIBQ9C010 78 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 WNT5BQ9H1J7 359 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 CIRBPQ14011 172 aaKnown RBP13.17□□□□□ -0.3
PTPRF-206ENST00000429895 LBHQ53QV2 105 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-206ENST00000429895 M0QZK8 103 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 GGCTO75223 188 aaKnown RBP13.17□□□□□ -0.3
PTPRF-206ENST00000429895 TIAF1O95411 115 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 GOLT1AQ6ZVE7 132 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 TUBD1Q9UJT1 453 aa13.17□□□□□ -0.3
PTPRF-206ENST00000429895 IGLV1-36A0A0B4J1U3 117 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 FUT5Q11128 374 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 B9A039 149 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 CXCL2P19875 107 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 ZNF345Q14585 488 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 UNQ9370/PRO34162Q6UXP9 181 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 MRPL18Q9H0U6 180 aaKnown RBP13.16□□□□□ -0.3
PTPRF-206ENST00000429895 PCM1Q15154 2024 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 NPIPB3Q92617 1050 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 YAE1D1Q9NRH1 226 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 RECKO95980 971 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 LIMS1P48059 325 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 RPL39P5Q59GN2 51 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 RARRES2Q99969 163 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 JPT1Q9UK76 154 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 WFDC6Q9BQY6 131 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 CHRNA10Q9GZZ6 450 aa13.16□□□□□ -0.3
PTPRF-206ENST00000429895 C17orf51A8MQB3 221 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 C4orf51C9J302 202 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 C8orf88P0DMB2 117 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 HKR1P10072 659 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 P2RY4P51582 365 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 TNFRSF9Q07011 255 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 TMEM45BQ96B21 275 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 TMEM186Q96B77 213 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 APOBEC3AP31941 199 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-206ENST00000429895 PKIAP61925 76 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 FAM206AQ9NX38 181 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 CEACAM4O75871 244 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 DNM1P46Q6ZS02 220 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 OR51G1Q8NGK1 321 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 ZNF729A6NN14 1252 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-206ENST00000429895 TRGC2P03986 189 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 RPS20P60866 119 aaKnown RBP13.15□□□□□ -0.3
PTPRF-206ENST00000429895 CACNG7P62955 275 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 COTL1Q14019 142 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 FAM201AQ5SY85 155 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 ELOVL5Q9NYP7 299 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 RGPD4Q7Z3J3 1758 aa13.15□□□□□ -0.3
PTPRF-206ENST00000429895 LEPROTL1O95214 131 aa13.15□□□□□ -0.31
PTPRF-206ENST00000429895 CELA3AP09093 270 aa13.15□□□□□ -0.31
PTPRF-206ENST00000429895 CD69Q07108 199 aa13.15□□□□□ -0.31
PTPRF-206ENST00000429895 ZNF818PQ6ZRF7 136 aa13.15□□□□□ -0.31
PTPRF-206ENST00000429895 MARVELD3Q96A59 401 aa13.15□□□□□ -0.31
PTPRF-206ENST00000429895 SSBP3Q9BWW4 388 aaPredicted RBP13.15□□□□□ -0.31
PTPRF-206ENST00000429895 KIAA1644Q3SXP7 199 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 SIGLEC12Q96PQ1 595 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 SH3BGRL3Q9H299 93 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 MRPS18AQ9NVS2 196 aaKnown RBP13.14□□□□□ -0.31
PTPRF-206ENST00000429895 C21orf62-AS1Q17RA5 79 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 IGHV3OR16-8A0A075B7F1 116 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 TRBV5-5A0A0J9YX44 114 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 RAB9AP51151 201 aa13.14□□□□□ -0.31
PTPRF-206ENST00000429895 MEF2BQ02080 365 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-206ENST00000429895 PARLQ9H300 379 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms