RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 CAMSAP1Q5T5Y3 1602 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 ADCY10Q96PN6 1610 aa2.2□□□□□ -2.06
USP40-204ENST00000427947 C2orf16Q68DN1 1984 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 TTC21AQ8NDW8 1320 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 DCHS2Q6V1P9 2916 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 VWA8A3KMH1 1905 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 SLIT1O75093 1534 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 ERICH3Q5RHP9 1530 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 KIAA0586Q9BVV6 1533 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 C5orf49A4QMS7 147 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 A8MUU9 505 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 ISLRO14498 428 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 CRYBA1P05813 215 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 CTSEP14091 401 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 ZNF708P17019 499 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 NELFEP18615 380 aaKnown RBP2.19□□□□□ -2.06
USP40-204ENST00000427947 MPIP34949 423 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 PSMB3P49720 205 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 GNG10P50151 68 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 SERPINB9P50453 376 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 ERVS71-1P61550 626 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 NAA20P61599 178 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 ELF3P78545 371 aaPredicted RBP2.19□□□□□ -2.06
USP40-204ENST00000427947 ZNF616Q08AN1 781 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 TMEM267Q0VDI3 215 aaPredicted RBP2.19□□□□□ -2.06
USP40-204ENST00000427947 TSPAN31Q12999 210 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 OR2F1Q13607 317 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 TAF1AQ15573 450 aaPredicted RBP2.19□□□□□ -2.06
USP40-204ENST00000427947 MAPK14Q16539 360 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 KPRPQ5T749 579 aaPredicted RBP2.19□□□□□ -2.06
USP40-204ENST00000427947 PRR9Q5T870 116 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 HES3Q5TGS1 186 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 MORN3Q6PF18 240 aaPredicted RBP2.19□□□□□ -2.06
USP40-204ENST00000427947 UNQ9165/PRO28630Q6UXU0 137 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 NIT1Q86X76 327 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 TMEM75Q8N9X5 138 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 OR8S1Q8NH09 359 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 GALMQ96C23 342 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 MED18Q9BUE0 208 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 TXNIPQ9H3M7 391 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 FKBP14Q9NWM8 211 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 VPS29Q9UBQ0 182 aa2.19□□□□□ -2.06
USP40-204ENST00000427947 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.19□□□□□ -2.06
USP40-204ENST00000427947 FAM135BQ49AJ0 1406 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 CHD7Q9P2D1 2997 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 MAP3K4Q9Y6R4 1608 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 IGHV1-45A0A0A0MS14 117 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 GMNCA6NCL1 334 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 SMIM9A6NGZ8 99 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 CLDN24A6NM45 220 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 K7ERS5 55 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 KPNA3O00505 521 aaPredicted RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 MRASO14807 208 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 UCHL3P15374 230 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 ALOX5APP20292 161 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 PPP1CCP36873 323 aaKnown RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 INPP1P49441 399 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 HLA-DRB3P79483 266 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 DR1Q01658 176 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 PRDX4Q13162 271 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 JOSD1Q15040 202 aaPredicted RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 HIST3H3Q16695 136 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 LINC00303Q3SY05 128 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 ZNF678Q5SXM1 525 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 MRPL2Q5T653 305 aaKnown RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 LCN8Q6JVE9 175 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 EBLN2Q6P2I7 272 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 FAM131AQ6UXB0 335 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 ZNF101Q8IZC7 436 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 CLDN22Q8N7P3 220 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 OR4A5Q8NH83 315 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 TMA16Q96EY4 203 aaKnown RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 DIRAS2Q96HU8 199 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 ANKRD36BP1Q96IX9 119 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 PRAP1Q96NZ9 151 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 OR7D2Q96RA2 312 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 TMEM109Q9BVC6 243 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 TSSK6Q9BXA6 273 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 ZNF717Q9BY31 904 aaPredicted RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 GNB1LQ9BYB4 327 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 PLA2G12AQ9BZM1 189 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 GLTPQ9NZD2 209 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 SAMHD1Q9Y3Z3 626 aaKnown RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 SLC22A7Q9Y694 548 aa2.18□□□□□ -2.06
USP40-204ENST00000427947 SONP18583 2426 aaKnown RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 COL27A1Q8IZC6 1860 aaPredicted RBP2.18□□□□□ -2.06
USP40-204ENST00000427947 NOS1P29475 1434 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 UACAQ9BZF9 1416 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 ABCC2Q92887 1545 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 TRAV8-1A0A0A6YYK1 113 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 D6RAR5 112 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 E5RI56 91 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 F5H5P2 479 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 TMEM250H0YL14 139 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 PSMD12O00232 456 aaPredicted RBP2.17□□□□□ -2.06
USP40-204ENST00000427947 POP7O75817 140 aaKnown RBP2.17□□□□□ -2.06
USP40-204ENST00000427947 MAP2K4P45985 399 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 CTBP2P56545 445 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 ARF6P62330 175 aa2.17□□□□□ -2.06
USP40-204ENST00000427947 BATFQ16520 125 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms