RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 VWA1Q6PCB0 445 aa11.93□□□□□ -0.5
LIG1-202ENST00000427526 ACP7Q6ZNF0 438 aa11.93□□□□□ -0.5
LIG1-202ENST00000427526 CYP2G1PQ6ZSU1 146 aa11.93□□□□□ -0.5
LIG1-202ENST00000427526 ZADH2Q8N4Q0 377 aa11.93□□□□□ -0.5
LIG1-202ENST00000427526 TMEM147Q9BVK8 224 aa11.93□□□□□ -0.5
LIG1-202ENST00000427526 TP53TG5Q9Y2B4 290 aa11.93□□□□□ -0.5
LIG1-202ENST00000427526 PPP1R2P9O14990 202 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 ZG16O60844 167 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 CLDN14O95500 239 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 KIR2DL2P43627 348 aaPredicted RBP11.92□□□□□ -0.5
LIG1-202ENST00000427526 NKX6-1P78426 367 aaPredicted RBP11.92□□□□□ -0.5
LIG1-202ENST00000427526 FOXF2Q12947 444 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 CATR1Q13166 79 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 GUSBP1Q15486 140 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 VWC2Q2TAL6 325 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 LBHQ53QV2 105 aaPredicted RBP11.92□□□□□ -0.5
LIG1-202ENST00000427526 Q6ZT83 130 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 GPR61Q9BZJ8 451 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 K7EM74 188 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 RAB29O14966 203 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 IGKV3-15P01624 115 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 MDKP21741 143 aaPredicted RBP11.92□□□□□ -0.5
LIG1-202ENST00000427526 HNF4GQ14541 408 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 FAM180AQ6UWF9 173 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 TCTEX1D1Q8N7M0 179 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 ZDHHC16Q969W1 377 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 SARAFQ96BY9 339 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 SMIM7Q9BQ49 75 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 SVILO95425 2214 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 CTXND1A0A1B0GTU2 59 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 TMEM250H0YL14 139 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 KBTBD11O94819 623 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 TFF1P04155 84 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 RAB4AP20338 218 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 TMEM241Q24JQ0 296 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 BTNL3Q6UXE8 466 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 WDR82Q6UXN9 313 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 OR10P1Q8NGE3 313 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 MRGPRDQ8TDS7 321 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 OPN3Q9H1Y3 402 aaPredicted RBP11.92□□□□□ -0.5
LIG1-202ENST00000427526 GFOD1Q9NXC2 390 aa11.92□□□□□ -0.5
LIG1-202ENST00000427526 HMGB3O15347 200 aaKnown RBP11.91□□□□□ -0.5
LIG1-202ENST00000427526 PFN1P07737 140 aaKnown RBP11.91□□□□□ -0.5
LIG1-202ENST00000427526 DDTP30046 118 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 NUTF2P61970 127 aaKnown RBP11.91□□□□□ -0.5
LIG1-202ENST00000427526 OR10G9Q8NGN4 311 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 OR10G7Q8NGN6 311 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 OR10D4PQ8NGN7 298 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 PYGO2Q9BRQ0 406 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 CXXC4Q9H2H0 198 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 SLC25A22Q9H936 323 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 DSPP15924 2871 aaKnown RBP11.91□□□□□ -0.5
LIG1-202ENST00000427526 LINC00473A8K010 186 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 PTBP3O95758 552 aaKnown RBP11.91□□□□□ -0.5
LIG1-202ENST00000427526 FGF7P21781 194 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 NCR3LG1Q68D85 454 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 WDR31Q8NA23 367 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 NINJ1Q92982 152 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 S100PBPQ96BU1 408 aa11.91□□□□□ -0.5
LIG1-202ENST00000427526 USF3Q68DE3 2245 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 DIDO1Q9BTC0 2240 aaKnown RBP11.9□□□□□ -0.5
LIG1-202ENST00000427526 A0A087X0M5 115 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.9□□□□□ -0.5
LIG1-202ENST00000427526 A0A1B0GX30 115 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 GABRA2P47869 451 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 PSMB3P49720 205 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 LINC00205P59089 165 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 TFF3Q07654 80 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 NPCDR1Q9BY65 106 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 METRNQ9UJH8 293 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 OR5H1A6NKK0 313 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 AGFG2O95081 481 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 SSTR5P35346 364 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 RPL23P62829 140 aaKnown RBP11.9□□□□□ -0.5
LIG1-202ENST00000427526 GNB2P62879 340 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 PRAMEF6Q5VXH4 476 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 ZNF66Q6ZN08 573 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 OR13A1Q8NGR1 328 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 GATAD1Q8WUU5 269 aa11.9□□□□□ -0.5
LIG1-202ENST00000427526 CIB3Q96Q77 187 aaPredicted RBP11.9□□□□□ -0.5
LIG1-202ENST00000427526 IFNL4K9M1U5 179 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 ADIRFQ15847 76 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 C4orf17Q53FE4 359 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 FFAR4Q5NUL3 377 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 H2BFWTQ7Z2G1 175 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 COL25A1Q9BXS0 654 aaPredicted RBP11.89□□□□□ -0.51
LIG1-202ENST00000427526 DKK4Q9UBT3 224 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 IFNA10P01566 189 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 KITLGP21583 273 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 COL10A1Q03692 680 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 BSXQ3C1V8 233 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 PDZD11Q5EBL8 140 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 C16orf82Q7Z2V1 217 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 Q8N7P7 452 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 TPRX1Q8N7U7 411 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 OR10A7Q8NGE5 316 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 RAB24Q969Q5 203 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 PARLQ9H300 379 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 MANBALQ9NQG1 85 aa11.89□□□□□ -0.51
LIG1-202ENST00000427526 LAMP3Q9UQV4 416 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms