RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 LY75O60449 1722 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 QSER1Q2KHR3 1735 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 C7orf72A4D263 438 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SCGNO76038 276 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC2A10O95528 541 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV3-23P01764 117 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ORM1P02763 201 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ANGP03950 147 aaKnown RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CRYGCP07315 174 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 HTR2BP41595 481 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TAS2R60P59551 318 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ARL6IP1Q15041 203 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 KPRPQ5T749 579 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 TEPPQ6URK8 271 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 DRAM2Q6UX65 266 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 B3GNT9Q6UX72 402 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 LINC00346Q8IVM7 164 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF664Q8N3J9 261 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 AQP11Q8NBQ7 271 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ROPN1LQ96C74 230 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 ACY3Q96HD9 319 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 C1orf147Q96MC9 270 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CGREF1Q99674 301 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 C1orf50Q9BV19 199 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 PSMC3IPQ9P2W1 217 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 PSG11Q9UQ72 335 aa2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 CHCHD2Q9Y6H1 151 aaPredicted RBP2.12□□□□□ -2.07
CCDC88A-205ENST00000426576 HEATR5AQ86XA9 2040 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ITPR2Q14571 2701 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 KCNE1BA0A087WTH5 132 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF729A6NN14 1252 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ANKRD65E5RJM6 399 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 SYNGR2O43760 224 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 MT-ND4P03905 459 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 MAS1P04201 325 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 H2AFB1P0C5Y9 115 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 HAMPP81172 84 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 TIGITQ495A1 244 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 IFI44LQ53G44 452 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 XP32Q5T750 250 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 HES5Q5TA89 166 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM88Q6PEY1 159 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 LRP11Q86VZ4 500 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 KRTAP19-1Q8IUB9 90 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNRF1Q8ND25 227 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 TMED6Q8WW62 240 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC25A46Q96AG3 418 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 DMRTB1Q96MA1 342 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 SORT1Q99523 831 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 NMNAT1Q9HAN9 279 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 UBE2J1Q9Y385 318 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV3OR16-8A0A075B7F1 116 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM72A0PK05 275 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 OR4C45A6NMZ5 311 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 LGALS9O00182 355 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ETV2O00321 342 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ABLIM1O14639 778 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 KRASP01116 189 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 IFNA1P01562 189 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 S100A8P05109 93 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 OR13C7P0DN81 318 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 PGM1P36871 562 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 LYZP61626 148 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 C3orf62Q6ZUJ4 267 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 GAPTQ8N292 157 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 C12orf45Q8N5I9 185 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 AMER2Q8N7J2 671 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 LRTM2Q8N967 370 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 APCDD1LQ8NCL9 501 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 OR5AN1Q8NGI8 311 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 BCL2L2Q92843 193 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC35C1Q96A29 364 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 C19orf53Q9UNZ5 99 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 IGHV3-66A0A0C4DH42 116 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 A0A1B0GWJ7 208 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 IQCF6A8MYZ5 107 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ORC5O43913 435 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CNOT3O75175 753 aaKnown RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 FKBP6O75344 327 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 NXPH4O95158 308 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 HAND1O96004 215 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 LALBAP00709 142 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CD3DP04234 171 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 HMGN1P05114 100 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CTSDP07339 412 aaPredicted RBP2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 HTR1AP08908 422 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CTRB1P17538 263 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 GABRB1P18505 474 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ALOX5APP20292 161 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 GABRB3P28472 473 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CX3CR1P49238 355 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 DLX6P56179 175 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 OR2B11Q5JQS5 317 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CLVS2Q5SYC1 327 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF626Q68DY1 528 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CTRB2Q6GPI1 263 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 Q6ZTC4 211 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 MBOAT2Q6ZWT7 520 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 CROCCP2Q86T23 111 aa2.11□□□□□ -2.07
CCDC88A-205ENST00000426576 NOXO1Q8NFA2 376 aa2.11□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms