RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 WNT5BQ9H1J7 359 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 PTGDSP41222 190 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 EMP1P54849 157 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 ST3GAL2Q16842 350 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM136Q6ZRR5 245 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 ABHD12Q8N2K0 398 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 SDF2L1Q9HCN8 221 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 G6PC2Q9NQR9 355 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 PCNX2A6NKB5 2137 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 PQLC2Q6ZP29 291 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 GVQW1Q8N7I0 195 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 AMER3Q8N944 861 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 CLDND2Q8NHS1 167 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 KCNK7Q9Y2U2 307 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 BRWD3Q6RI45 1802 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 GZMKP49863 264 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 OR51G1Q8NGK1 321 aa5.94□□□□□ -1.46
SCN1A-204ENST00000423058 NXT2Q9NPJ8 142 aaKnown RBP5.94□□□□□ -1.46
SCN1A-204ENST00000423058 OR4C45A6NMZ5 311 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 CD1AP06126 327 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 SAPCD1Q5SSQ6 148 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 FAM27BQ5VT28 67 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 OR9G1Q8NH87 305 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 MZB1Q8WU39 189 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 SLC6A13Q9NSD5 602 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 CALYQ9NYX4 217 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 ST6GALNAC2Q9UJ37 374 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 COLQQ9Y215 455 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-204ENST00000423058 HEATR5AQ86XA9 2040 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 TRGV2A0A075B6R0 118 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 FBLL1A6NHQ2 334 aaKnown RBP5.93□□□□□ -1.46
SCN1A-204ENST00000423058 DIRC3C9JPN6 131 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 PMCHL1Q16048 86 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 SOSTQ9BQB4 213 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 FAM60AQ9NP50 221 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 FRRS1LQ9P0K9 344 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 SOCS1O15524 211 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 CT62P0C5K7 136 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 CRYBB2P43320 205 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 ARF6P62330 175 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 CD69Q07108 199 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 ITLN1Q8WWA0 313 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 UCN2Q96RP3 112 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 NEU1Q99519 415 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 MRPL32Q9BYC8 188 aaKnown RBP5.93□□□□□ -1.46
SCN1A-204ENST00000423058 FUT9Q9Y231 359 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 HLA-DQA1P01909 254 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 HCP5Q6MZN7 132 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 MEGF10Q96KG7 1140 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 TMEM74BQ9NUR3 256 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 ASB1Q9Y576 335 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 DENND4AQ7Z401 1863 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 A0A087X0M5 115 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 A0A1B0GX30 115 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 K7ERU9 68 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 EWSR1Q01844 656 aaKnown RBP eCLIP5.93□□□□□ -1.46
SCN1A-204ENST00000423058 ZP4Q12836 540 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 RTN4RL2Q86UN3 420 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 SCMH1Q96GD3 660 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 MRM2Q9UI43 246 aaKnown RBP5.93□□□□□ -1.46
SCN1A-204ENST00000423058 LRP5O75197 1615 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 PSMB11A5LHX3 300 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 GAGE10A6NGK3 116 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 AMY1AP04745 511 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 ISG15P05161 165 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 ZIC1Q15915 447 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 CBLN3Q6UW01 205 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 LRTM2Q8N967 370 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 VN1R17PQ8TDU5 208 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 IL36RNQ9UBH0 155 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 METRNQ9UJH8 293 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 HSF4Q9ULV5 492 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 HIST1H1AQ02539 215 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-204ENST00000423058 C10orf126Q8N4M7 172 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 FAM57AQ8TBR7 257 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 LINC01587Q99440 93 aa5.93□□□□□ -1.46
SCN1A-204ENST00000423058 LOC102723996A0A087X1L8 192 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TM4SF5O14894 197 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 FXYD3Q14802 87 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 ZNF146Q15072 292 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 CLEC18BQ6UXF7 455 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 NKX2-6A6NCS4 301 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 C1QAP02745 245 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 SP9P0CG40 484 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 VSIG10L2P0DP72 767 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 PGFP49763 221 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 OVCH2Q7RTZ1 564 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 OR1K1Q8NGR3 316 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 SFRP2Q96HF1 295 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 VCX2Q9H322 139 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 PAM16Q9Y3D7 125 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TRAV20A0A0B4J274 112 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 OGG1O15527 345 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 CEACAM1P13688 526 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TCF23Q7RTU1 214 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 SAXO1Q8IYX7 474 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 C10orf111Q8N326 155 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TMEFF2Q9UIK5 374 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-204ENST00000423058 TRBV7-9A0A0J9YWB2 115 aa5.92□□□□□ -1.46
SCN1A-204ENST00000423058 A0A1B0GVG6 124 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms