RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.97□□□□□ -0.97
USP54-204ENST00000422491 WDR83OSQ9Y284 106 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 TRIOO75962 3097 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 GTF3C1Q12789 2109 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 MYO9BQ13459 2157 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 SAA2-SAA4A0A096LPE2 208 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 RNF212BA8MTL3 300 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 SNURFLB1AK76 121 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 SPINK2P20155 84 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 HNRNPA3P51991 378 aaKnown RBP8.97□□□□□ -0.97
USP54-204ENST00000422491 UBE2V1Q13404 147 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 Q6P435 159 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 Q6ZN92 141 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 MOB1BQ7L9L4 216 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 MRPL21Q7Z2W9 205 aaKnown RBP8.97□□□□□ -0.97
USP54-204ENST00000422491 GGNQ86UU5 652 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 SFXN3Q9BWM7 321 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 SH2D2AQ9NP31 389 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 SDK2Q58EX2 2172 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 EYSQ5T1H1 3165 aa8.97□□□□□ -0.97
USP54-204ENST00000422491 TRBV9A0A0B4J1U6 114 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 ZNF253O75346 499 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 ARL14EPLP0DKL9 152 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 CCL2P13500 99 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 CCNOP22674 350 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 CARD18P57730 90 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 RPP30P78346 268 aaKnown RBP8.96□□□□□ -0.97
USP54-204ENST00000422491 PCOLCEQ15113 449 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 TXN2Q99757 166 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 TMEM204Q9BSN7 226 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 GNB1LQ9BYB4 327 aa8.96□□□□□ -0.97
USP54-204ENST00000422491 LOC105371242A0A075B767 164 aa8.96□□□□□ -0.98
USP54-204ENST00000422491 SS18L1O75177 396 aaPredicted RBP8.96□□□□□ -0.98
USP54-204ENST00000422491 IGHEP01854 428 aa8.96□□□□□ -0.98
USP54-204ENST00000422491 RPL30P62888 115 aaKnown RBP8.96□□□□□ -0.98
USP54-204ENST00000422491 ZNF497Q6ZNH5 498 aa8.96□□□□□ -0.98
USP54-204ENST00000422491 LYG1Q8N1E2 194 aa8.96□□□□□ -0.98
USP54-204ENST00000422491 C5orf30Q96GV9 206 aa8.96□□□□□ -0.98
USP54-204ENST00000422491 AKIRIN1Q9H9L7 192 aaPredicted RBP8.96□□□□□ -0.98
USP54-204ENST00000422491 A0A1W2PPV4 95 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 C15orf62A8K5M9 175 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 RRHO14718 337 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 CXCL13O43927 109 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 S1PR2O95136 353 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 STAG3L2P0CL84 134 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 STAG3L3P0CL85 134 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 CEACAM8P31997 349 aaPredicted RBP8.95□□□□□ -0.98
USP54-204ENST00000422491 AMTP48728 403 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 EDDM3BP56851 147 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 BRWD1-AS2P59051 145 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 ZNF816Q0VGE8 651 aaPredicted RBP8.95□□□□□ -0.98
USP54-204ENST00000422491 EIF4EBP1Q13541 118 aaPredicted RBP8.95□□□□□ -0.98
USP54-204ENST00000422491 SSPNQ14714 243 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 Q6ZVH6 145 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 SLC25A45Q8N413 288 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 ST6GALNAC3Q8NDV1 305 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 KCNE4Q8WWG9 221 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 APH1AQ96BI3 265 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 KCNS1Q96KK3 526 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 RCHY1Q96PM5 261 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 COX11Q9Y6N1 276 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 A0A1W2PS18 150 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 AQP7O14520 342 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 WISP2O76076 250 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 CD1BP29016 333 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 ZNF718Q3SXZ3 478 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 MORN2Q502X0 79 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 OR10J3Q5JRS4 329 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 MMD2Q8IY49 270 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 ZNF645Q8N7E2 425 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 CADM4Q8NFZ8 388 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 MBNL3Q9NUK0 354 aaKnown RBP8.95□□□□□ -0.98
USP54-204ENST00000422491 TRAPPC2LQ9UL33 140 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 YTHDF2Q9Y5A9 579 aaKnown RBP8.95□□□□□ -0.98
USP54-204ENST00000422491 C5orf49A4QMS7 147 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 RHBDL1O75783 438 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 IGHV3-9P01782 118 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 ZNF83P51522 516 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 RPEL1Q2QD12 228 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 NRN1LQ496H8 165 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 SPINK9Q5DT21 86 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 DCAF12Q5T6F0 453 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 UNQ5815/PRO19632Q6UWF5 114 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 YRDCQ86U90 279 aaKnown RBP8.95□□□□□ -0.98
USP54-204ENST00000422491 PRRG4Q9BZD6 226 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 V9GYV3 84 aa8.95□□□□□ -0.98
USP54-204ENST00000422491 USF3Q68DE3 2245 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 C9JCJ5 164 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 SIRPB1O00241 398 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 NGFP01138 241 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 C3orf79P0CE67 100 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 TSPOP30536 169 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 PRRX1P54821 245 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 RPL31P62899 125 aaKnown RBP8.94□□□□□ -0.98
USP54-204ENST00000422491 MRPL14Q6P1L8 145 aaKnown RBP8.94□□□□□ -0.98
USP54-204ENST00000422491 SYT13Q7L8C5 426 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 NIT1Q86X76 327 aa8.94□□□□□ -0.98
USP54-204ENST00000422491 ALKBH7Q9BT30 221 aaPredicted RBP8.94□□□□□ -0.98
USP54-204ENST00000422491 MRPS16Q9Y3D3 137 aaKnown RBP8.94□□□□□ -0.98
USP54-204ENST00000422491 TRAV34A0A0B4J273 112 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms