RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 Q0VFX4 171 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 VWC2Q2TAL6 325 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 DUSP23Q9BVJ7 150 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 PATZ1Q9HBE1 687 aaKnown RBP17.82■□□□□ 0.44
USP48-205ENST00000421625 PAM16Q9Y3D7 125 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 MPC1Q9Y5U8 109 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 M0QZK8 103 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 RBMXL2O75526 392 aaKnown RBP17.82■□□□□ 0.44
USP48-205ENST00000421625 THBS3P49746 956 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 EDDM3BP56851 147 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 WDR86Q86TI4 376 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 PKIBQ9C010 78 aa17.82■□□□□ 0.44
USP48-205ENST00000421625 MDFIC2A0A1B0GVS7 189 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 F6UZH7 168 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 J3QT63 122 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 LINC00205P59089 165 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 ZNF645Q8N7E2 425 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 DIRC2Q96SL1 478 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 PPP1R14DQ9NXH3 145 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 C17orf112F2Z3M2 114 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 TNFSF13O75888 250 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 BATFQ16520 125 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 TEX43Q6ZNM6 134 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 MIEN1Q9BRT3 115 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 LINC00470Q9BZP3 86 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 KCNIP2Q9NS61 270 aa17.81■□□□□ 0.44
USP48-205ENST00000421625 MBNL3Q9NUK0 354 aaKnown RBP17.81■□□□□ 0.44
USP48-205ENST00000421625 CFIP05156 583 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 CEBPDP49716 269 aaPredicted RBP17.8■□□□□ 0.44
USP48-205ENST00000421625 LHX2P50458 406 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 YPEL3P61236 119 aaPredicted RBP17.8■□□□□ 0.44
USP48-205ENST00000421625 GTF3C1Q12789 2109 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 IL11RAQ14626 422 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 C20orf144Q9BQM9 153 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 HSPB9Q9BQS6 159 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 RYDENQ9NUL5 291 aaKnown RBP17.8■□□□□ 0.44
USP48-205ENST00000421625 SERF1AO75920 110 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 SELEP16581 610 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 KITLGP21583 273 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 BTF3L4Q96K17 158 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 IGKV3D-15A0A087WSY6 115 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 TPPP2P59282 170 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 MCEMP1Q8IX19 187 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 OR52L2PQ8NGH6 319 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 LPAR2Q9HBW0 351 aa17.8■□□□□ 0.44
USP48-205ENST00000421625 PATE3B3GLJ2 98 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 F2Z2F3 143 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 BRS3P32247 399 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 TNFSF10P50591 281 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 VN1R17PQ8TDU5 208 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 SCO2A0A1W2PP80 73 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 SERPINA7P05543 415 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 CELA3AP09093 270 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 FOLR3P41439 243 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 UBALD2Q8IYN6 164 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 SAP25Q8TEE9 199 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 WIPI2Q9Y4P8 454 aa17.79■□□□□ 0.44
USP48-205ENST00000421625 OTX2P32243 289 aa17.78■□□□□ 0.44
USP48-205ENST00000421625 SELENOTP62341 195 aa17.78■□□□□ 0.44
USP48-205ENST00000421625 EIF4EBP1Q13541 118 aaPredicted RBP17.78■□□□□ 0.44
USP48-205ENST00000421625 ARSJQ5FYB0 599 aaPredicted RBP17.78■□□□□ 0.44
USP48-205ENST00000421625 SCCPDHQ8NBX0 429 aa17.78■□□□□ 0.44
USP48-205ENST00000421625 OCC1Q8TAD7 63 aa17.78■□□□□ 0.44
USP48-205ENST00000421625 A0A1W2PPV4 95 aa17.78■□□□□ 0.44
USP48-205ENST00000421625 C15orf62A8K5M9 175 aa17.78■□□□□ 0.44
USP48-205ENST00000421625 CACNA1DQ01668 2161 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 MT-CO3P00414 261 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 FRMD6-AS1P0C7T7 363 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 ARL14EPLP0DKL9 152 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 TIMP3P35625 211 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 PLP2Q04941 152 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 TRIP6Q15654 476 aaKnown RBP17.77■□□□□ 0.44
USP48-205ENST00000421625 H2BFWTQ7Z2G1 175 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 IFI44Q8TCB0 444 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 MRPS18CQ9Y3D5 142 aaKnown RBP17.77■□□□□ 0.44
USP48-205ENST00000421625 SLC17A3O00476 420 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 CRISP2P16562 243 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 GAGE1Q13065 139 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 LPAL2Q16609 132 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 HLA-DRB5Q30154 266 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 VASH2Q86V25 355 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 CIB3Q96Q77 187 aaPredicted RBP17.77■□□□□ 0.44
USP48-205ENST00000421625 MRPL18Q9H0U6 180 aaKnown RBP17.77■□□□□ 0.44
USP48-205ENST00000421625 WDR83OSQ9Y284 106 aa17.77■□□□□ 0.44
USP48-205ENST00000421625 TECTAO75443 2155 aa17.77■□□□□ 0.43
USP48-205ENST00000421625 RAC2P15153 192 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 COL8A2P25067 703 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 HOXA4Q00056 320 aaPredicted RBP17.76■□□□□ 0.43
USP48-205ENST00000421625 ZNF90Q03938 601 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 OR10G8Q8NGN5 311 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 RNF114Q9Y508 228 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 C12orf77C9JDV5 145 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 NXPH2O95156 264 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 CD1BP29016 333 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 ARR3P36575 388 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 PAFAH1B2P68402 229 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 TMEM183BQ1AE95 376 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 PMS2CLQ68D20 193 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 VAMP8Q9BV40 100 aa17.76■□□□□ 0.43
USP48-205ENST00000421625 OR2J1Q9GZK6 312 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms