RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 PAX6P26367 422 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 BRWD1-AS2P59051 145 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 SPCS3P61009 180 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 GNB2P62879 340 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 EFNB3Q15768 340 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 C17orf58Q2M2W7 97 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 SPANXN5Q5MJ07 72 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 ATRAIDQ6UW56 229 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.24□□□□□ -0.61
LIMS1-205ENST00000410093 CLRN3Q8NCR9 226 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 DTD1Q8TEA8 209 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 TMEM147Q9BVK8 224 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 GGACTQ9BVM4 153 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 SCRT1Q9BWW7 348 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 WDR61Q9GZS3 305 aaKnown RBP11.24□□□□□ -0.61
LIMS1-205ENST00000410093 IFI27L2Q9H2X8 130 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 FAM96BQ9Y3D0 163 aa11.24□□□□□ -0.61
LIMS1-205ENST00000410093 IGHV3-43A0A0B4J1X8 118 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 LINC00473A8K010 186 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 M0R1X1 148 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 DSCAMO60469 2012 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 FSTL3O95633 263 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 METTL15P1P0C7V9 234 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 IGHV3-43DP0DP04 118 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 TAGLN2P37802 199 aaKnown RBP11.23□□□□□ -0.61
LIMS1-205ENST00000410093 SRSF1Q07955 248 aaKnown RBP eCLIP11.23□□□□□ -0.61
LIMS1-205ENST00000410093 SLC38A11Q08AI6 406 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 TMEM267Q0VDI3 215 aaPredicted RBP11.23□□□□□ -0.61
LIMS1-205ENST00000410093 GUCA2BQ16661 112 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 NCMAPQ5T1S8 102 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 SP5Q6BEB4 398 aaPredicted RBP11.23□□□□□ -0.61
LIMS1-205ENST00000410093 BTNL3Q6UXE8 466 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 C22orf34Q6ZV56 151 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 ZNF429Q86V71 674 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 THNSL2Q86YJ6 484 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 OR10P1Q8NGE3 313 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 OR10G4Q8NGN3 311 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 MBD3L1Q8WWY6 194 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 ZNF251Q9BRH9 671 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 TMEM231Q9H6L2 316 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 SAP30LQ9HAJ7 183 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 NDRG3Q9UGV2 375 aa11.23□□□□□ -0.61
LIMS1-205ENST00000410093 USF3Q68DE3 2245 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 RBFOX3A6NFN3 312 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 AGPAT2O15120 278 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 NXPH3O95157 252 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 CYB5R3P00387 301 aaPredicted RBP11.22□□□□□ -0.61
LIMS1-205ENST00000410093 HSPB1P04792 205 aaKnown RBP11.22□□□□□ -0.61
LIMS1-205ENST00000410093 CA7P43166 264 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 ATP5IP56385 69 aaPredicted RBP11.22□□□□□ -0.61
LIMS1-205ENST00000410093 POU2AF1Q16633 256 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 IZUMO4Q1ZYL8 232 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 VWC2Q2TAL6 325 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 KHDC3LQ587J8 217 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 SPRNQ5BIV9 151 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 NCR3LG1Q68D85 454 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 C8orf31Q8N9H6 132 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 OR4A16Q8NH70 328 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 DDB2Q92466 427 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 TAF15Q92804 592 aaKnown RBP eCLIP11.22□□□□□ -0.61
LIMS1-205ENST00000410093 DCTN5Q9BTE1 182 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 FBXO7Q9Y3I1 522 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 PRRC2CQ9Y520 2896 aaKnown RBP11.22□□□□□ -0.61
LIMS1-205ENST00000410093 DOPEY2Q9Y3R5 2298 aa11.22□□□□□ -0.61
LIMS1-205ENST00000410093 COL12A1Q99715 3063 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 PPIAL4EA0A075B759 164 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 DEFB108AA8MXU0 73 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 B9A039 149 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 PPIAL4DF5H284 164 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 H3BP45 60 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 TMEM178BH3BS89 294 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 FCGR3BO75015 233 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 RBMXL2O75526 392 aaKnown RBP11.21□□□□□ -0.61
LIMS1-205ENST00000410093 HRASP01112 189 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 TFF1P04155 84 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 PPIAL4FP0DN26 164 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 DAOP14920 347 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 APOBEC3AP31941 199 aaPredicted RBP11.21□□□□□ -0.61
LIMS1-205ENST00000410093 FHITP49789 147 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 TMEM41BQ5BJD5 291 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 FAM71F2Q6NXP2 309 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 SPSB3Q6PJ21 355 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 RNASE6Q93091 150 aaKnown RBP11.21□□□□□ -0.61
LIMS1-205ENST00000410093 WFIKKN1Q96NZ8 548 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 TUBA4BQ9H853 241 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 KAAG1Q9UBP8 84 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 RPUSD1Q9UJJ7 312 aaKnown RBP11.21□□□□□ -0.61
LIMS1-205ENST00000410093 PPIAL4AQ9Y536 164 aa11.21□□□□□ -0.61
LIMS1-205ENST00000410093 RAI1Q7Z5J4 1906 aaPredicted RBP11.21□□□□□ -0.62
LIMS1-205ENST00000410093 CADP27708 2225 aa11.21□□□□□ -0.62
LIMS1-205ENST00000410093 TRGV8A0A0C4DH27 118 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 LOC105371267A0A1B0GV96 52 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 CEBPZOSA8MTT3 80 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 C17orf112F2Z3M2 114 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 MPDU1O75352 247 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 CD3EP07766 207 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 CHRNB4P30926 498 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 PPT1P50897 306 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 RHEBQ15382 184 aa11.2□□□□□ -0.62
LIMS1-205ENST00000410093 OR2B11Q5JQS5 317 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms