RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 VPS13CQ709C8 3753 aa11.44□□□□□ -0.58
GPNMB-203ENST00000409458 hCG_1809904A0A1W2PP81 198 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 A0A1W2PPE2 198 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 KANTRA0A1W2PQU2 76 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 A0A1W2PR64 198 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 A0A1W2PRV1 198 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 VWC2LB2RUY7 222 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 CRYZL1O95825 349 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 IGLV1-47P01700 117 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 NUP62P37198 522 aaPredicted RBP11.43□□□□□ -0.58
GPNMB-203ENST00000409458 PAX2Q02962 417 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 HLA-DRB5Q30154 266 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 VKORC1L1Q8N0U8 176 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 TNFRSF14Q92956 283 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 COA4Q9NYJ1 87 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 NDUFS8O00217 210 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 ENSAO43768 121 aaKnown RBP11.43□□□□□ -0.58
GPNMB-203ENST00000409458 CFDP00746 253 aaPredicted RBP11.43□□□□□ -0.58
GPNMB-203ENST00000409458 OR9G9P0C7N8 305 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 PAX1P15863 534 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 IL3RAP26951 378 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 RPL12P30050 165 aaKnown RBP11.43□□□□□ -0.58
GPNMB-203ENST00000409458 KRTAP10-9P60411 292 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 CLEC2AQ6UVW9 174 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 TEX261Q6UWH6 196 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 SSX9Q7RTT3 188 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 H2BFWTQ7Z2G1 175 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 PNKDQ8N490 385 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 KIR3DL3Q8N743 410 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 BEND2Q8NDZ0 799 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 ARPC5LQ9BPX5 153 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 SLC35D1Q9NTN3 355 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 U3KQ87 197 aa11.43□□□□□ -0.58
GPNMB-203ENST00000409458 IGHV4-30-2A0A087WSY4 118 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 IGHV4-61A0A0C4DH41 118 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 IGHV2-70DA0A0C4DH43 119 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 H0YJW9 148 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 TMEM50AO95807 157 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 IGKV1-16P04430 117 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 NQO2P16083 231 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 P2RY1P47900 373 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 PRRX1P54821 245 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 KLRD1Q13241 179 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 RTL8BQ17RB0 113 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 OR4P4Q8NGL7 312 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 NABP2Q9BQ15 211 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 GSX2Q9BZM3 304 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 MMP26Q9NRE1 261 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 TENM4Q6N022 2769 aa11.42□□□□□ -0.58
GPNMB-203ENST00000409458 FAM157AC9JC47 383 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 WRBO00258 174 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 CHST1O43916 411 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 GPR137BO60478 399 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 ERVK-16P61578 105 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 HCP5Q6MZN7 132 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 SLC51BQ86UW2 128 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 TGIF2LXQ8IUE1 241 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 OR5AN1Q8NGI8 311 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 OR13D1Q8NGV5 346 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 ZC4H2Q9NQZ6 224 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 TMEM140Q9NV12 185 aa11.41□□□□□ -0.58
GPNMB-203ENST00000409458 TACC2O95359 2948 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 BUB1B-PAK6H3BSN5 160 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 APOA2P02652 100 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 MMP9P14780 707 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 PVALBP20472 110 aaPredicted RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 PRTN3P24158 256 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 PAX9P55771 341 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 OR2B8PP59922 312 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 VAMP2P63027 116 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 EXOSC2Q13868 293 aaKnown RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 DHRS7BQ6IAN0 325 aaPredicted RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 CLEC9AQ6UXN8 241 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 ZNF767PQ75MW2 155 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 VMO1Q7Z5L0 202 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 ZNF680Q8NEM1 530 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 BSCL2Q96G97 398 aaPredicted RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 LYRM2Q9NU23 88 aaPredicted RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 HSPB7Q9UBY9 170 aa11.4□□□□□ -0.58
GPNMB-203ENST00000409458 PAIP2BQ9ULR5 123 aaKnown RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 ASH1LQ9NR48 2969 aaKnown RBP11.4□□□□□ -0.58
GPNMB-203ENST00000409458 TRAV3A0A0B4J244 114 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 IGSF23A1L1A6 192 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 FAM24AA6NFZ4 105 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 FAM90A9PA6NNJ1 464 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 FAM90A26D6RGX4 464 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 SYNGR2O43760 224 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 SPDEFO95238 335 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 ARG1P05089 322 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 IAPPP10997 89 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 UBA52P62987 128 aaKnown RBP11.4□□□□□ -0.59
GPNMB-203ENST00000409458 TNFRSF9Q07011 255 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 OR2C3Q8N628 320 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 OR11H6Q8NGC7 330 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 ZNF471Q9BX82 626 aaPredicted RBP11.4□□□□□ -0.59
GPNMB-203ENST00000409458 QTRT1Q9BXR0 403 aaKnown RBP11.4□□□□□ -0.59
GPNMB-203ENST00000409458 SIRPDQ9H106 197 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 CYTL1Q9NRR1 136 aa11.4□□□□□ -0.59
GPNMB-203ENST00000409458 FBXL17Q9UF56 701 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms