RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CREBL2O60519 120 aaPredicted RBP14.54□□□□□ -0.08
SDC1-203ENST00000403076 DUS4LO95620 317 aaKnown RBP14.54□□□□□ -0.08
SDC1-203ENST00000403076 CD24P25063 80 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 RPS16P62249 146 aaKnown RBP14.54□□□□□ -0.08
SDC1-203ENST00000403076 HNF4GQ14541 408 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 TMEM187Q14656 261 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 DHRS7BQ6IAN0 325 aaPredicted RBP14.54□□□□□ -0.08
SDC1-203ENST00000403076 PDPNQ86YL7 162 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 ZNF695Q8IW36 515 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 UXS1Q8NBZ7 420 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 COQ8AQ8NI60 647 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 CFHR4Q92496 578 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 FLYWCH2Q96CP2 140 aaKnown RBP14.54□□□□□ -0.08
SDC1-203ENST00000403076 RBMXL1Q96E39 390 aaKnown RBP14.54□□□□□ -0.08
SDC1-203ENST00000403076 SSX3Q99909 188 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 CDC42EP3Q9UKI2 254 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 ALG5Q9Y673 324 aa14.54□□□□□ -0.08
SDC1-203ENST00000403076 A0A0A6YYJ9 748 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 MDFIC2A0A1B0GVS7 189 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 RBFOX2O43251 390 aaKnown RBP eCLIP14.53□□□□□ -0.08
SDC1-203ENST00000403076 HPRT1P00492 218 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 IGKV1D-33P01593 117 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 IGKV1-33P01594 117 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 SNRNP70P08621 437 aaKnown RBP14.53□□□□□ -0.08
SDC1-203ENST00000403076 UCP1P25874 307 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 BRWD1-AS2P59051 145 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 SRPXP78539 464 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 SCGB2A2Q13296 93 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 LRRC75BQ2VPJ9 315 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 ZNF585BQ52M93 769 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 Q6ZNX1 250 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 LIAT1Q6ZQX7 453 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 LGI3Q8N145 548 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 PHB2Q99623 299 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 FAM212BQ9NTI7 297 aaPredicted RBP14.53□□□□□ -0.08
SDC1-203ENST00000403076 NAV3Q8IVL0 2385 aa14.53□□□□□ -0.08
SDC1-203ENST00000403076 HIVEP1P15822 2718 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 SNRPGP15A8MWD9 76 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 SHOXO15266 292 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 S1PR2O95136 353 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 VENTXO95231 258 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 IGKV1-16P04430 117 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 FAM106CPP0CH98 169 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 HABP2Q14520 560 aaPredicted RBP14.52□□□□□ -0.08
SDC1-203ENST00000403076 ANKRD55Q3KP44 614 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 LIN54Q6MZP7 749 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 C12orf45Q8N5I9 185 aaPredicted RBP14.52□□□□□ -0.08
SDC1-203ENST00000403076 OR4C13Q8NGP0 309 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 OR2T10Q8NGZ9 312 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 PLEKHA2Q9HB19 425 aa14.52□□□□□ -0.08
SDC1-203ENST00000403076 ZNF469Q96JG9 3925 aaPredicted RBP14.52□□□□□ -0.09
SDC1-203ENST00000403076 A0A0B4J293 547 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 SSNA1O43805 119 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 CDS2O95674 445 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 RPA2P15927 270 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 SRD5A1P18405 259 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 TMEM268Q5VZI3 342 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 RNASE11Q8TAA1 199 aaKnown RBP14.51□□□□□ -0.09
SDC1-203ENST00000403076 OR51J1Q9H342 316 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 F8P00451 2351 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 C7orf66A4D0T2 115 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 VGLL3A8MV65 326 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 INAFM1C9JVW0 142 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 ATG12O94817 140 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 MOSP00540 346 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 HRASP01112 189 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 KRASP01116 189 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 DYNLT3P51808 116 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 ERVK-16P61578 105 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 TMEM177Q53S58 311 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 RBMS3Q6XE24 437 aaKnown RBP14.51□□□□□ -0.09
SDC1-203ENST00000403076 THNSL2Q86YJ6 484 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 SELENOHQ8IZQ5 122 aaKnown RBP14.51□□□□□ -0.09
SDC1-203ENST00000403076 OSR1Q8TAX0 266 aaPredicted RBP14.51□□□□□ -0.09
SDC1-203ENST00000403076 MITD1Q8WV92 249 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 RBPMSQ93062 196 aaKnown RBP14.51□□□□□ -0.09
SDC1-203ENST00000403076 R3HDM4Q96D70 268 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 EAF1Q96JC9 268 aaPredicted RBP14.51□□□□□ -0.09
SDC1-203ENST00000403076 HARBI1Q96MB7 349 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 TMEM56Q96MV1 263 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 TMEM56-RWDD3S4R434 201 aa14.51□□□□□ -0.09
SDC1-203ENST00000403076 PIGBOS1A0A0B4J2F0 54 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 BTBD17A6NE02 478 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 FAM90A9PA6NNJ1 464 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 H3BUX3 64 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 NQO2P16083 231 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 TMEM11P17152 192 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 AKR1C2P52895 323 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 AANATQ16613 207 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 SSX9Q7RTT3 188 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 SIGLECL1Q8N7X8 197 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 DMBX1Q8NFW5 382 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 LHFPL5Q8TAF8 219 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 AIFM2Q9BRQ8 373 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 COMMD9Q9P000 198 aa14.5□□□□□ -0.09
SDC1-203ENST00000403076 A0A0B4J2A0 478 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 IGKV1-39P01597 117 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 IGKV1D-39P04432 117 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 LGALS7P47929 136 aa14.49□□□□□ -0.09
SDC1-203ENST00000403076 LY6EQ16553 131 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms