RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SPTBN1Q01082 2364 aaKnown RBP15.65■□□□□ 0.1
USP48-204ENST00000400301 PTBP3O95758 552 aaKnown RBP15.65■□□□□ 0.1
USP48-204ENST00000400301 IL18BPO95998 194 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 ANOS1P23352 680 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 LRRC75BQ2VPJ9 315 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 NPVFQ9HCQ7 196 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 IQCF6A8MYZ5 107 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 CNN1P51911 297 aaKnown RBP15.65■□□□□ 0.1
USP48-204ENST00000400301 MST1LQ2TV78 715 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 SLC24A4Q8NFF2 622 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 GUCD1Q96NT3 240 aa15.65■□□□□ 0.1
USP48-204ENST00000400301 CXorf65A6NEN9 183 aa15.64■□□□□ 0.1
USP48-204ENST00000400301 NDUFB4O95168 129 aa15.64■□□□□ 0.1
USP48-204ENST00000400301 NTF3P20783 257 aa15.64■□□□□ 0.1
USP48-204ENST00000400301 WDR25Q64LD2 544 aaPredicted RBP15.64■□□□□ 0.1
USP48-204ENST00000400301 ZNF497Q6ZNH5 498 aa15.64■□□□□ 0.1
USP48-204ENST00000400301 HARBI1Q96MB7 349 aa15.64■□□□□ 0.1
USP48-204ENST00000400301 TFF1P04155 84 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 PTPRSQ13332 1948 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 RPL31P62899 125 aaKnown RBP15.64■□□□□ 0.09
USP48-204ENST00000400301 C1orf185Q5T7R7 199 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 MIC13Q5XKP0 118 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 ACSM6Q6P461 480 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 C9orf106Q8NAJ2 232 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 KDF1Q8NAX2 398 aaPredicted RBP15.64■□□□□ 0.09
USP48-204ENST00000400301 CLDND2Q8NHS1 167 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 FAM103A1Q9BTL3 118 aaKnown RBP15.64■□□□□ 0.09
USP48-204ENST00000400301 TMEM140Q9NV12 185 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 PITPNC1Q9UKF7 332 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 CXorf1O96002 111 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 DBX2Q6ZNG2 339 aa15.64■□□□□ 0.09
USP48-204ENST00000400301 C16orf97H3BN30 126 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 IGLV3-1P01715 115 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 REG1BP48304 166 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 NMSQ5H8A3 153 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 ABHD12Q8N2K0 398 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 JPT1Q9UK76 154 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 IFNL4K9M1U5 179 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 MPDU1O75352 247 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 LGALS4P56470 323 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 S100A7AQ86SG5 101 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 LURAP1Q96LR2 239 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 TECRQ9NZ01 308 aaKnown RBP15.63■□□□□ 0.09
USP48-204ENST00000400301 OR51B2Q9Y5P1 312 aa15.63■□□□□ 0.09
USP48-204ENST00000400301 MISP3Q96FF7 219 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 TIMD4Q96H15 378 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 GPR61Q9BZJ8 451 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 TMEM167BQ9NRX6 74 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 NAT8BQ9UHF3 227 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 FCN1O00602 326 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 SRSF7Q16629 238 aaKnown RBP eCLIP15.62■□□□□ 0.093e-8■□□□□ 10.9
USP48-204ENST00000400301 SIGLECL1Q8N7X8 197 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 ZNF383Q8NA42 475 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 QTRT1Q9BXR0 403 aaKnown RBP15.62■□□□□ 0.09
USP48-204ENST00000400301 COLCA2A8K830 154 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 ICAM4Q14773 271 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 OR5B3Q8NH48 314 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 TMEM171Q8WVE6 324 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 PARLQ9H300 379 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 TUBA4BQ9H853 241 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 ZNF835Q9Y2P0 537 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 UBE2L3P68036 154 aaKnown RBP15.62■□□□□ 0.09
USP48-204ENST00000400301 RPL39P5Q59GN2 51 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 TPPP3Q9BW30 176 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 METTL1Q9UBP6 276 aaKnown RBP15.62■□□□□ 0.09
USP48-204ENST00000400301 TCF19Q9Y242 345 aa15.62■□□□□ 0.09
USP48-204ENST00000400301 DKK1O94907 266 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 COLCA1Q6ZS62 124 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 GCSAMQ8N6F7 178 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 VSTM2AQ8TAG5 236 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 PCGF1Q9BSM1 259 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 IGHV2OR16-5A0A0B4J2B6 119 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 PCNX2A6NKB5 2137 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 HERPUD1Q15011 391 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 SGMS2Q8NHU3 365 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 ZNF586Q9NXT0 402 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 ZNF318Q5VUA4 2279 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 C9JQL5 133 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 RAMP3O60896 148 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 CLN5O75503 358 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 ZNF439Q8NDP4 499 aa15.61■□□□□ 0.09
USP48-204ENST00000400301 SS18L1O75177 396 aaPredicted RBP15.6■□□□□ 0.09
USP48-204ENST00000400301 EGR1P18146 543 aa15.6■□□□□ 0.09
USP48-204ENST00000400301 FAM201AQ5SY85 155 aa15.6■□□□□ 0.09
USP48-204ENST00000400301 FLYWCH2Q96CP2 140 aaKnown RBP15.6■□□□□ 0.09
USP48-204ENST00000400301 SLC25A10Q9UBX3 287 aaPredicted RBP15.6■□□□□ 0.09
USP48-204ENST00000400301 MS4A10Q96PG2 267 aa15.6■□□□□ 0.09
USP48-204ENST00000400301 KBTBD11O94819 623 aa15.6■□□□□ 0.09
USP48-204ENST00000400301 COX7A1P24310 79 aa15.6■□□□□ 0.09
USP48-204ENST00000400301 FAM3BP58499 235 aaPredicted RBP15.6■□□□□ 0.09
USP48-204ENST00000400301 SSTP61278 116 aa15.6■□□□□ 0.09
USP48-204ENST00000400301 C20orf204Q6ZNR8 217 aa15.6■□□□□ 0.09
USP48-204ENST00000400301 KIAA1324LA8MWY0 1029 aaPredicted RBP15.59■□□□□ 0.09
USP48-204ENST00000400301 CD55P08174 381 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 HABP2Q14520 560 aaPredicted RBP15.59■□□□□ 0.09
USP48-204ENST00000400301 IQCJQ1A5X6 159 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 C1orf162Q8NEQ5 155 aaPredicted RBP15.59■□□□□ 0.09
USP48-204ENST00000400301 TCL1AP56279 114 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 TFF3Q07654 80 aa15.59■□□□□ 0.09
USP48-204ENST00000400301 TRGC1P0CF51 173 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms