RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 LINC00205P59089 165 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 PDPNQ86YL7 162 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 ZNF645Q8N7E2 425 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 OR11H1Q8NG94 326 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 OR5AP2Q8NGF4 316 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 SNAPC3Q92966 411 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 SLC35D1Q9NTN3 355 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 ZNF580Q9UK33 172 aa22.17■■□□□ 1.14
HMGB1-205ENST00000399494 H3BMQ9 156 aa22.16■■□□□ 1.14
HMGB1-205ENST00000399494 C3orf84H3BNL1 204 aa22.16■■□□□ 1.14
HMGB1-205ENST00000399494 HLA-DQB1P01920 261 aa22.16■■□□□ 1.14
HMGB1-205ENST00000399494 CBX3Q13185 183 aa22.16■■□□□ 1.14
HMGB1-205ENST00000399494 PLGLAQ15195 96 aa22.16■■□□□ 1.14
HMGB1-205ENST00000399494 MYOZ3Q8TDC0 251 aa22.16■■□□□ 1.14
HMGB1-205ENST00000399494 EXTL2Q9UBQ6 330 aa22.16■■□□□ 1.14
HMGB1-205ENST00000399494 ZNF107Q9UII5 783 aaPredicted RBP22.16■■□□□ 1.14
HMGB1-205ENST00000399494 ZNF256Q9Y2P7 627 aaPredicted RBP22.16■■□□□ 1.14
HMGB1-205ENST00000399494 SLC22A5O76082 557 aa22.15■■□□□ 1.14
HMGB1-205ENST00000399494 OR5H8P0DN80 308 aa22.15■■□□□ 1.14
HMGB1-205ENST00000399494 FCGR2CP31995 323 aa22.15■■□□□ 1.14
HMGB1-205ENST00000399494 KIAA0141Q14154 515 aaPredicted RBP22.15■■□□□ 1.14
HMGB1-205ENST00000399494 CDK10Q15131 360 aa22.15■■□□□ 1.14
HMGB1-205ENST00000399494 NPBQ8NG41 125 aa22.15■■□□□ 1.14
HMGB1-205ENST00000399494 DYNC2LI1Q8TCX1 351 aa22.15■■□□□ 1.14
HMGB1-205ENST00000399494 C5orf30Q96GV9 206 aa22.15■■□□□ 1.14
HMGB1-205ENST00000399494 CCDC59Q9P031 241 aaKnown RBP22.15■■□□□ 1.14
HMGB1-205ENST00000399494 RPS16P62249 146 aaKnown RBP22.14■■□□□ 1.13
HMGB1-205ENST00000399494 TAGLNQ01995 201 aaKnown RBP22.14■■□□□ 1.13
HMGB1-205ENST00000399494 C5orf64Q2M2E5 130 aa22.14■■□□□ 1.13
HMGB1-205ENST00000399494 FLYWCH2Q96CP2 140 aaKnown RBP22.14■■□□□ 1.13
HMGB1-205ENST00000399494 ADTRPQ96IZ2 230 aa22.14■■□□□ 1.13
HMGB1-205ENST00000399494 RNF5Q99942 180 aa22.14■■□□□ 1.13
HMGB1-205ENST00000399494 SCPEP1Q9HB40 452 aa22.14■■□□□ 1.13
HMGB1-205ENST00000399494 EHFQ9NZC4 300 aa22.14■■□□□ 1.13
HMGB1-205ENST00000399494 ADAM30Q9UKF2 790 aa22.14■■□□□ 1.13
HMGB1-205ENST00000399494 STAB2Q8WWQ8 2551 aa22.14■■□□□ 1.13
HMGB1-205ENST00000399494 IGKV1D-13A0A0B4J2D9 117 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 TUSC2O75896 110 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 NDUFA3O95167 84 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 IGKV1-16P04430 117 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 IGKV1-13P0DP09 117 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 PPIFP30405 207 aaKnown RBP22.13■■□□□ 1.13
HMGB1-205ENST00000399494 TAS2R46P59540 309 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 RTL8BQ17RB0 113 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 TSNAXQ99598 290 aaKnown RBP22.13■■□□□ 1.13
HMGB1-205ENST00000399494 KLK15Q9H2R5 256 aa22.13■■□□□ 1.13
HMGB1-205ENST00000399494 I3L521 148 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 RRHO14718 337 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 AADACP22760 399 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 LIN54Q6MZP7 749 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 ZNF491Q8N8L2 437 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 OR5H2Q8NGV7 314 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 GPX8Q8TED1 209 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 SECTM1Q8WVN6 248 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 UBE2E2Q96LR5 201 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 FBXL15Q9H469 300 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 ANAPC10Q9UM13 185 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 CEPT1Q9Y6K0 416 aa22.12■■□□□ 1.13
HMGB1-205ENST00000399494 PPYP01298 95 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 HLA-DRB1P01911 266 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 RRASP10301 218 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 DUTP33316 252 aaKnown RBP22.11■■□□□ 1.13
HMGB1-205ENST00000399494 INSL3P51460 131 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 ASPHD1Q5U4P2 390 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 BVESQ8NE79 360 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 OR1N2Q8NGR9 330 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 GNB4Q9HAV0 340 aa22.11■■□□□ 1.13
HMGB1-205ENST00000399494 RBMX2Q9Y388 322 aaKnown RBP22.11■■□□□ 1.13
HMGB1-205ENST00000399494 SULT1C2O00338 296 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 PMP2P02689 132 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 NAT1P18440 290 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 FXYD4P59646 89 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 RUNX1Q01196 453 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 RNASE12Q5GAN4 147 aaKnown RBP22.1■■□□□ 1.13
HMGB1-205ENST00000399494 LAX1Q8IWV1 398 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 C15orf40Q8WUR7 153 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 METTL1Q9UBP6 276 aaKnown RBP22.1■■□□□ 1.13
HMGB1-205ENST00000399494 WSB1Q9Y6I7 421 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 SMAD5-AS1Q9Y6J3 95 aa22.1■■□□□ 1.13
HMGB1-205ENST00000399494 CTDSP2O14595 271 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 IGLV1-40P01703 118 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 RFX2P48378 723 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 HERV-K104P61576 105 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 TMEM65Q6PI78 240 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 KCTD9Q7L273 389 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 HARBI1Q96MB7 349 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 C6orf62Q9GZU0 229 aaPredicted RBP22.09■■□□□ 1.13
HMGB1-205ENST00000399494 MIXL1Q9H2W2 232 aa22.09■■□□□ 1.13
HMGB1-205ENST00000399494 LINC00473A8K010 186 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 G3V318 75 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 SHOXO15266 292 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 SPDEFO95238 335 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 OR8U8P0C7N1 319 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 HLA-DMAP28067 261 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 RCVRNP35243 200 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 ZNF616Q08AN1 781 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 PSG5Q15238 335 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 GIMAP1Q8WWP7 306 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 SLC5A7Q9GZV3 580 aa22.08■■□□□ 1.13
HMGB1-205ENST00000399494 PARP11Q9NR21 331 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms